G160005


Basic Information

Item Value
gene id G160005
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 5000839 ~ 5001296 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU181649
ATATGAACGATCTCTTCTTGGGCAGCATTGGTTACACGCCCTGCCCTACACAGATTTTTGTCCAATCAAACTCACTCTCTAGTGAGAATGCCCCGCCCCTTAACCGACAACCAGGTTCAAAAGTGCATTACCAATAGTACTAAAACTATTTTAAGGTTATCGTGTTACATTTTGATGTCGTTTACAATATGCCTGATGAAATGAGAAAATGTTTATGACAGGAATCAAATCAGGACCGTCTTTAGACTTCACACCATGAAGGCCATCAGCATTACTTCACAAAGATGCTTCAAATTTGTTAATGCAGCCTCCAAATATCTTTCATGTGACAGTTTTCATCAAGTAACTCTGAAGCGTCCTCACCGCCACGGTAAGTAAAGTAGCCCAGCGTTAAGAAATCACACACAGCAGGTCTCTGATGGAGCTGTAATCTGATGTTAATTAATCCTGTGAATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181649 True 458 lncRNA 0.41 1 5000839 5001296

Neighbor

gene id symbol gene type direction distance location
CI01000030_04965586_04966361 NA coding upstream 34445 4964805 ~ 4966394 (+)
CI01000030_04956344_04956706 NA coding upstream 43601 4956306 ~ 4957238 (+)
CI01000030_04822608_04834394 NA coding upstream 166439 4822608 ~ 4834400 (+)
CI01000030_04804199_04820916 KIF14 coding upstream 179573 4804199 ~ 4821266 (+)
CI01000030_04794796_04802874 DDX59 coding upstream 197907 4794642 ~ 4802932 (+)
CI01000030_05012841_05025567 NA coding downstream 11317 5012613 ~ 5026000 (+)
CI01000030_05136652_05140919 NA coding downstream 135214 5136510 ~ 5141441 (+)
CI01000030_05209012_05215995 NA coding downstream 207499 5208795 ~ 5216398 (+)
CI01000030_05246572_05249806 NA coding downstream 245276 5246572 ~ 5250513 (+)
CI01000030_05294880_05297650 NA coding downstream 293381 5294677 ~ 5298226 (+)
G159934 NA non-coding upstream 107478 4893024 ~ 4893361 (+)
G159933 NA non-coding upstream 109091 4891515 ~ 4891748 (+)
G159923 NA non-coding upstream 127701 4872938 ~ 4873138 (+)
G159920 NA non-coding upstream 132058 4868578 ~ 4868781 (+)
G159917 NA non-coding upstream 142390 4858217 ~ 4858449 (+)
G159978 NA non-coding downstream 648 5001944 ~ 5002162 (+)
G160037 NA non-coding downstream 38539 5039835 ~ 5040127 (+)
G159960 NA non-coding downstream 44262 5045558 ~ 5080706 (+)
G160060 NA non-coding downstream 121774 5123070 ~ 5123366 (+)
G159988 NA non-coding downstream 282318 5283614 ~ 5286342 (+)
G159816 NA other upstream 483732 4516778 ~ 4517381 (+)
G159685 NA other upstream 512313 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 1957066 3018776 ~ 3043773 (+)
G158416 NA other upstream 2386546 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 2718469 2277208 ~ 2282743 (+)
CI01000030_07200104_07202258 GCGA other downstream 2198639 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 2852789 7868292 ~ 7886228 (+)
G162088 NA other downstream 3236669 8237965 ~ 8239604 (+)
G161986 NA other downstream 3543286 8544582 ~ 8548325 (+)
G162137 NA other downstream 3566714 8568010 ~ 8571726 (+)

Expression


Co-expression Network