XLOC_000891 (gpr108)


Basic Information

Item Value
gene id XLOC_000891
gene name gpr108
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 59146298 ~ 59151058 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001396
ATGAATCCTGAAGGTTACCTGTCTGCCACTGAGATTCCTCTGCCGCGTCTCTACATCTCCATGGCAGGAATCTTCTTCATGGCTGCGGTGGTGTGGACATACACACTgtaCAGTGTGTTCAAAATCCACTGGCTGATGGCGGCTCTGGCCTACACTAAAGCTGTGTCTCTACTCTTTCACAGTATCAACTATTACTTCATTAACTCTGATGGTTACCCGATTGAAGGATTGGCTGTCATGTACTACATCACACACTTgctgAAAGGTGCTCTGCTGTTCATCACTCTGGCTCTCATCGGCACCGGCTTCGCCTTCGTTAAATACATCCTCTCAGACAAAGAGAAGAAGATCTTCATGATCGTCATCcctctgcaggtTCTGGCGAATGTGGCCTACATCATCATTGAGGAGACAGAGGAAGGCTCCAGTGAGTACGCTCTGTGGAGGGAGATCCTGTTCCTGGTGGACCTGATCTGCTGCGGAGCTGTGCTGTTCCCCGtcgtctgGTCCATCCGGCATCTGCAGGAGGCCTCCAACACGGATGGAAAagCTGCCATTAACCTGGAGAAGCTGAAGCTCTTCAGGCAGTATTATGTGATGATCGTGTGTTATATCTACTTCACGCGCATCATTGCTTTAGTGCTGAAGGTCATGGTGCCGTTCCAGTGGCAGTGGTGTCAAGAGTTGTTAGTGGAGGTTTCTACTTTGATTTTCTTTGTCTTGACGGGATTCAAGTTCCGACCGGCGTCCAATAATCCGTACCTGCAGCTGCCTCAGGACGAGGAGGACCTGGAGATGGATGAAGTTGTAACCGAGTCGGGAGTGTTGGAGGGAATCCACAAGGTGAAGAAAACGTCTAAcggcagagagagacagagagaggtcGCACTGTGA
>TCONS_00001397
caggtgaaTATCACAGAGAGGAATCCTGAAGGTTACCTGTCTGCCACTGAGATTCCTCTGCCGCGTCTCTACATCTCCATGGCAGGAATCTTCTTCATGGCTGCGGTGGTGTGGACATACACACTGCTGaaacacaggtaCAGTGTGTTCAAAATCCACTGGCTGATGGCGGCTCTGGCCTACACTAAAGCTGTGTCTCTACTCTTTCACAGTATCAACTATTACTTCATTAACTCTGATGGTTACCCGATTGAAGGATTGGCTGTCATGTACTACATCACACACTTgctgAAAGGTGCTCTGCTGTTCATCACTCTGGCTCTCATCGGCACCGGCTTCGCCTTCGTTAAATACATCCTCTCAGACAAAGAGAAGAAGATCTTCATGATCGTCATCcctctgcaggtTCTGGCGAATGTGGCCTACATCATCATTGAGGAGACAGAGGAAGGCTCCAGTGAGTACGCTCTGTGGAGGGAGATCCTGTTCCTGGTGGACCTGATCTGCTGCGGAGCTGTGCTGTTCCCCGtcgtctgGTCCATCCGGCATCTGCAGGAGGCCTCCAACACGGATGGAAAagCTGCCATTAACCTGGAGAAGCTGAAGCTCTTCAGGCAGTATTATGTGATGATCGTGTGTTATATCTACTTCACGCGCATCATTGCTTTAGTGCTGAAGGTCATGGTGCCGTTCCAGTGGCAGTGGTGTCAAGAGTTGTTAGTGGAGGTTTCTACTTTGATTTTCTTTGTCTTGACGGGATTCAAGTTCCGACCGGCGTCCAATAATCCGTACCTGCAGCTGCCTCAGGACGAGGAGGACCTGGAGATGGATGAAGTTGTAACCGAGTCGGGAGTGTTGGAGGGAATCCACAAGGTGAAGAAAACGTCTAAcggcagagagagacagagagaggtcGCACTGTGAGTGGCATATTGGGAGGGCGGAGCCTGGACTCTGAAGCCCCTCCCTTTACCTTCCCCAGGTTGCTCCCATGGCTACCACAGACTCACTATGCAAGTGAAAAACAACAGAACGGAAGAAAACGAGTGTGAATGAAGCACGCCTTATACGACTTCTGTCTGGTTTTCCTGAACGGATGAGCTGAACCTCTGTACAGACACTGGGACGGCGGTGACGCAGACTGAATCTGTTTGGTTTTGGTTTACAGTAATGATGTCGTCAGTCTGCGCTGTCTGTTAATTCGTTTGCTCATTTTCCTCCTTCATTCCAAAGATTTGCAATCATTATAATGAAAAACGGTTTGTTTGATTTTAACCTTTTATTTCCTCGTGTCTTTATTATTTAACCGATgttattgtttgtatattatgtttttttcttctgttaattaTTTGATAAGATGGCTGGAGAGAGGCGACTCTTCAACAGGATCGTGAAGCTGGCGTATATAAATTTAAAGCACACTGGGACAGATCAgagtttggttgtttgtttttttttgctaaactGTCATCAGTTATGCTGAGGAATTGgagaattattatttataaaaccagTGTTTCATTTGCTTCAAATGGTTGGGATTTCTTTAACTAGGTTGATTTTCTAAAGTTATATATTTCTTTAATGCGTGTTACTCCCACATTAAAGGTCTGCGGCTGTTAATTTTCTATTCTGTCCTGAATGAAATGTCACTTCAGTCTTATCGCGTCACacaacactgctttatttattttattctgattTCCCCATCTAAGCTATTTGTCCCTCATTCTATACAGATCTTAGTAATAGTAATAGAGTAATAAATAAAGCACAAACCACTGTTACGCCGCGTCTTACAGCAAACGCGACGCGCGGCCATAATCAACGGTCAGCACAGAGCGCGGGAAACTATTGTTGACCTTTGACATTACCCTTCAAACCAACTTTTAGCCATTTTTGTTCCTGCAGTGCTTTGAAAATGGCTAACGCTGTGAGGAAACTCTTCCTGCTTGATTTATGTTGCTGGTTTATCCTGTCAGTTGTGTTCGAGTGTCAAATAAATCGAATAACTTAAA
>TCONS_00001398
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaggctgAAAGGTGCTCTGCTGTTCATCACTCTGGCTCTCATCGGCACCGGCTTCGCCTTCGTTAAATACATCCTCTCAGACAAAGAGAAGAAGATCTTCATGATCGTCATCcctctgcaggtTCTGGCGAATGTGGCCTACATCATCATTGAGGAGACAGAGGAAGGCTCCAGTGAGTACGCTCTGTGGAGGGAGATCCTGTTCCTGGTGGACCTGATCTGCTGCGGAGCTGTGCTGTTCCCCGtcgtctgGTCCATCCGGCATCTGCAGGAGGCCTCCAACACGGATGGAAAagCTGCCATTAACCTGGAGAAGCTGAAGCTCTTCAGGCAGTATTATGTGATGATCGTGTGTTATATCTACTTCACGCGCATCATTGCTTTAGTGCTGAAGGTCATGGTGCCGTTCCAGTGGCAGTGGTGTCAAGAGTTGTTAGTGGAGGTTTCTACTTTGATTTTCTTTGTCTTGACGGGATTCAAGTTCCGACCGGCGTCCAATAATCCGTACCTGCAGCTGCCTCAGGACGAGGAGGACCTGGAGATGGATGAAGTTGTAACCGAGTCGGGAGTGTTGGAGGGAATCCACAAGGTGAAGAAAACGTCTAAcggcagagagagacagagagaggtcGCACTGTGAGTGGCATATTGGGAGGGCGGAGCCTGGACTCTGAAGCCCCTCCCTTTACCTTCCCCAGGTTGCTCCCATGGCTACCACAGACTCACTATGCAAGTGAAAAACAACAGAACGGAAGAAAACGAGTGTGAATGAAGCACGCCTTATACGACTTCTGTCTGGTTTTCCTGAACGGATGAGCTGAACCTCTGTACAGACACTGGGACGGCGGTGACGCAGACTGAATCTGTTTGGTTTTGGTTTACAGTAATGATGTCGTCAGTCTGCGCTGTCTGTTAATTCGTTTGCTCATTTTCCTCCTTCATTCCAAAGATTTGCAATCATTATAATGAAAAACGGTTTGTTTGATTTTAACCTTTTATTTCCTCGTGTCTTTATTATTTAACCGATgttattgtttgtatattatgtttttttcttctgttaattaTTTGATAAGATGGCTGGAGAGAGGCGACTCTTCAACAGGATCGTGAAGCTGGCGTATATAAATTTAAAGCACACTGGGACAGATCAgagtttggttgtttgtttttttttgctaaactGTCATCAGTTATGCT
>TCONS_00001399
gtgtgtgtgtcttgcagCTGCCATTAACCTGGAGAAGCTGAAGCTCTTCAGGCAGTATTATGTGATGATCGTGTGTTATATCTACTTCACGCGCATCATTGCTTTAGTGCTGAAGGTCATGGTGCCGTTCCAGTGGCAGTGGTGTCAAGAGTTGTTAGTGGAGGTTTCTACTTTGATTTTCTTTGTCTTGACGGGATTCAAGTTCCGACCGGCGTCCAATAATCCGTACCTGCAGCTGCCTCAGGACGAGGAGGACCTGGAGATGGATGAAGTTGTAACCGAGTCGGGAGTGTTGGAGGGAATCCACAAGGTGAAGAAAACGTCTAAcggcagagagagacagagagaggtcGCACTGTGAGTGGCATATTGGGAGGGCGGAGCCTGGACTCTGAAGCCCCTCCCTTTACCTTCCCCAGGTTGCTCCCATGGCTACCACAGACTCACTATGCAAGTGAAAAACAACAGAACGGAAGAAAACGAGTGTGAATGAAGCACGCCTTATACGACTTCTGTCTGGTTTTCCTGAACGGATGAGCTGAACCTCTGTACAGACACTGGGACGGCGGTGACGCAGACTGAATCTGTTTGGTTTTGGTTTACAGTAATGATGTCGTCAGTCTGCGCTGTCTGTTAATTCGTTTGCTCATTTTCCTCCTTCATTCCAAAGATTTGCAATCATTATAATGAAAAACGGTTTGTTTGATTTTAACCTTTTATTTCCTCGTGTCTTTATTATTTAACCGATgttattgtttgtatattatgtttttttcttctgttaattaTTTGATAAGATGGCTGGAGAGAGGCGACTCTTCAACAGGATCGTGAAGCTGGCGTATATAAATTTAAAGCACACTGGGACAGATCAgagtttggttgtttgtttttttttgctaaactGTCATCAGTTATGCT

Function

symbol description
gpr108 Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and membrane.

GO: NA

KEGG:

id description
ko04030 G protein-coupled receptors

Ensembl:

ensembl_id ENSDARG00000096651

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001396 False 894 mRNA 0.50 11 59146298 59149961
TCONS_00001397 False 2021 mRNA 0.44 10 59146409 59151058
TCONS_00001398 False 1235 lncRNA 0.47 7 59147385 59150521
TCONS_00001399 True 921 lncRNA 0.45 4 59148742 59150521

Neighbor

gene id symbol gene type direction distance location
XLOC_000890 gpr108 coding upstream 282 59142783 ~ 59146016 (+)
XLOC_000889 NA coding upstream 7704 59137883 ~ 59138594 (+)
XLOC_000888 FP015850.1 coding upstream 14892 59131292 ~ 59131406 (+)
XLOC_000887 mfap4 coding upstream 54242 59090583 ~ 59092056 (+)
XLOC_000886 MFAP4 coding upstream 56700 59073203 ~ 59089598 (+)
XLOC_000892 soul5l coding downstream 3463 59154521 ~ 59158077 (+)
XLOC_000893 NA coding downstream 10907 59161965 ~ 59162831 (+)
XLOC_000894 NA coding downstream 97072 59248130 ~ 59251679 (+)
XLOC_000895 rdh8b coding downstream 142815 59293873 ~ 59303460 (+)
XLOC_000896 NA coding downstream 161472 59312530 ~ 59313528 (+)
XLOC_000879 NA non-coding upstream 169611 58975017 ~ 58976687 (+)
XLOC_000878 NA non-coding upstream 186841 58956066 ~ 58959457 (+)
XLOC_000876 NA non-coding upstream 291921 58853170 ~ 58854377 (+)
XLOC_000899 FP236157.1 non-coding downstream 369242 59520300 ~ 59522571 (+)
XLOC_000901 NA non-coding downstream 394571 59545629 ~ 59547121 (+)

Expression


Co-expression Network