G162015


Basic Information

Item Value
gene id G162015
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7988580 ~ 7989175 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU183956
AGGACAACAAACTAATGGCTGTCTTATGAACGGGTAGTTCTCTTTTTAGTCGTTGTATTGTTTAGTCGGTTCAGTTTTAGGCTATATGCAAAAACGCACTCTCGTTTTCCTCATTAGGATATGAAATGCACTATATATAGATATAAAGTAATTTTCTGTTTATTTATCCATGTGACTAAGATTTTCCATCGATGTGGCATTTGTTTAATCGAGAGTCTAAAACGAGTGAACCGCCTGAACAATTACTTACTATTTTGGTGGAGGGACAATCAATAAAATGCTTAGTTATGACCTAACGGCATATACAAACACTTTTCTTCTTCTATTTGACCAGCCTCGAAAACCCATTGACTAACAAACAAAGAGGAGGAAAAAGCACTTCCTTAAAATGGTGGATTAGTGGTGAATTAAAGCACTGATTTTCTGTATTAAACCCATATCGAGTTCGACGAACCGCGGAAAAGATGGTTGCCTTCAGCCTGACATGAATAAATAAACAAATAAATGAACGAGTGAATGCATTCAAGGCATCAATGATTACACGTTTGAGTGAGTGAATGAATGAACTCCAGTATGAATAGACAGATAGATAGAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU183956 True 596 lncRNA 0.36 1 7988580 7989175

Neighbor

gene id symbol gene type direction distance location
CI01000030_07968740_07975571 NOL8 coding upstream 12859 7968676 ~ 7975721 (+)
CI01000030_07967106_07968408 NOL8 coding upstream 19996 7967106 ~ 7968584 (+)
CI01000030_07954583_07955459 NA coding upstream 32106 7954583 ~ 7956474 (+)
CI01000030_07924704_07945878 ECM2, OMD coding upstream 42641 7924704 ~ 7945939 (+)
CI01000030_07903607_07912664 IPPK coding upstream 75271 7903607 ~ 7913309 (+)
CI01000030_07990330_08009606 NISCH coding downstream 1155 7990330 ~ 8010155 (+)
CI01000030_08047726_08057237 STAB1 coding downstream 58551 8047726 ~ 8057237 (+)
CI01000030_08133065_08140755 RBCK1 coding downstream 143890 8133065 ~ 8140998 (+)
CI01000030_08150901_08154024 GM7936 coding downstream 161726 8150901 ~ 8154024 (+)
CI01000030_08155452_08158318 RDH5 coding downstream 166277 8155452 ~ 8158709 (+)
G161974 NA non-coding upstream 431 7986556 ~ 7988149 (+)
G161954 NA non-coding upstream 115392 7859914 ~ 7873188 (+)
G161956 NA non-coding upstream 126892 7861182 ~ 7861688 (+)
G161953 NA non-coding upstream 130317 7855627 ~ 7858263 (+)
G161950 NA non-coding upstream 141823 7846196 ~ 7846757 (+)
G161977 NA non-coding downstream 43175 8032350 ~ 8111022 (+)
CI01000030_08168074_08174577 NA non-coding downstream 180181 8167927 ~ 8174662 (+)
G162074 NA non-coding downstream 198205 8187380 ~ 8187595 (+)
G162080 NA non-coding downstream 208569 8197744 ~ 8198028 (+)
CI01000030_07868597_07886123 NA other upstream 115808 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 786095 7200104 ~ 7202485 (+)
G159816 NA other upstream 3471473 4516778 ~ 4517381 (+)
G159685 NA other upstream 3500054 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 4944807 3018776 ~ 3043773 (+)
G162088 NA other downstream 248790 8237965 ~ 8239604 (+)
G161986 NA other downstream 555407 8544582 ~ 8548325 (+)
G162137 NA other downstream 578835 8568010 ~ 8571726 (+)
G162449 NA other downstream 1367228 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 2053618 10039358 ~ 10047210 (+)

Expression


Co-expression Network