G162088


Basic Information

Item Value
gene id G162088
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8237965 ~ 8239604 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184054
CGGAAAGCCAGAAATGTGCACTCAAACAGTGTGAGGGGCTTTTTGATCTGTGAACATTCGAGATTTTGCATCTGCATGTCTTTGAGCTCCACGAGGCAACGAACAAGACTGAAGCATCTCTCAGGGGACAGATCTTTCCTCCTCAAAGACCTAATGTACTTTGTTACTTTTTTGTGGTTCTCTGAACTACTGTCTTGCAATGGAGGCAGGAATCCTTCAAGTGTTTGTCTGCTGGAATCACAAGAAATTCCGAAGAGAAAACAGTTAAAAAGATCCAAGTGTTCATTTTTGCTTTGCACGGCCACATCAATCACACCTTTGAGAAAATCAGACAAATTAGACTTTTGCCCCTTTTTAGTTTTTATTAATTCCAGGGAGTCTTGATTTCCTGATAGAAATTCATGAAAAACAAACAAGGCTGCAAAGAATTCCTGAACACTGAGATGGACAAAGCTGTAAAGTTTAGTCCTGTTATATCCAACTTTGCACTCAGAGACACAGGTGATGATGCCAGGATATCGAAGAGCATCATCAGGAGTGATATAATATTTCCTCAAGTCTTCTTTACTGAAGACTGTATTCCGTTCCTTCAGCTTCCAGTAAGCCAGCTTTGCCAGTTTCTTAATCAGTTCCTTGTGCTGTATGAGAGCATCTTCATGTGGAAGTTCTTTCCGTTGATATTTGTTGTGGCTTAACGTAGTCTGATTGAGCAGATAGTGGATATACATTTCTGTCTGATTTGAGGGCATGTCCCTATCTTTATTTTGACTTTTAATTATGTTTTTGAGAACAACCGATGAAATCCAACAAAAGAGAGGTATGTGGCACAATATCCACAGGCTCTTATGAGACTTCAGGTGACGGATAACTTTTTGGGTTAGATCTGGATCCTCAAACTGCCTCGTGAAGTACTCCTCCTTTTGTTCATCTGTGAATCCTCTGATCTGTGTGACGTATCCCTGTCTGAAGATCTCAGATGGAAGCTGTCCAGCAGCCACAGGCCGGCTGGTGATCCACAGGTGTGCGGATGGAAGCAGTTTTCCTCGTAGAAGGTTTACTAGAAGGACATCCAGTGTGTTTTTTTTAGTAACATCTGACAAAATGTCTTTGGCTTCAAATTTCAAATCATTTTTATATTCATCCAGACCATCTAAGATGAACAGAACTTTTCTATCAAAGATCCAGTCAGAGATGTGCCTCGCCTCTTTGGGTAACTCTGGGTAAAAGACACAAAGCAGGTCAAAAAGACTCTGGTTGTCTCCCTCATGCAGGTTCAGCTCTCGGAACGGGAGCAGAAAAACAAGCTCTAGATCCTGATTGGCTTCTCCGCTTGCCCAGTCATGGACAAACTTCTGCACCGTGACCGTTTTTCCAATTCCAGCAATTCCTTTTGTTAAAGCAATCTTCATGGTTCGATTTTCATCCACTGGTGGTTTAAGAATTTCATTGTAGTTTATAACTGTCTGCGCTGATGTGTTTATATCATTCGTCTGAATCTGCCAGATCTCATGTTCTTTATTGATGGGGTCCGAGTCGTCATTGATGATAAACAGTTGTGTGTAGATCTTATTTAGCGTGACAGACTGTTGTGCGCTTCCCTCCAAAATCCTCTCCGAATCCTTCATCATTCTTGATTTCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU184054 True 1640 TUCP 0.41 1 8237965 8239604

Neighbor

gene id symbol gene type direction distance location
CI01000030_08168074_08174577 NA coding upstream 63303 8167927 ~ 8174662 (+)
CI01000030_08159242_08166884 GLS2B coding upstream 71020 8159242 ~ 8166945 (+)
CI01000030_08155452_08158318 RDH5 coding upstream 79256 8155452 ~ 8158709 (+)
CI01000030_08150901_08154024 GM7936 coding upstream 83941 8150901 ~ 8154024 (+)
CI01000030_08133065_08140755 RBCK1 coding upstream 96967 8133065 ~ 8140998 (+)
CI01000030_08555726_08559327 MMYHEMB1 coding downstream 315775 8555379 ~ 8559397 (+)
CI01000030_08763819_08775586 NA coding downstream 524126 8763730 ~ 8775772 (+)
CI01000030_08837486_08838040 NA coding downstream 597617 8837221 ~ 8838451 (+)
CI01000030_08845484_08861801 NA coding downstream 605880 8845484 ~ 8861801 (+)
CI01000030_08862264_08875155 NA coding downstream 622660 8862264 ~ 8875155 (+)
G162087 NA non-coding upstream 282 8237338 ~ 8237683 (+)
G162080 NA non-coding upstream 39937 8197744 ~ 8198028 (+)
G162074 NA non-coding upstream 50370 8187380 ~ 8187595 (+)
G162091 NA non-coding downstream 10074 8249678 ~ 8249892 (+)
G162092 NA non-coding downstream 10394 8249998 ~ 8250302 (+)
G162097 NA non-coding downstream 30470 8270074 ~ 8270414 (+)
G162103 NA non-coding downstream 43455 8283059 ~ 8283528 (+)
G162105 NA non-coding downstream 60017 8299621 ~ 8299855 (+)
CI01000030_07868597_07886123 NA other upstream 365193 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 1035480 7200104 ~ 7202485 (+)
G159816 NA other upstream 3720858 4516778 ~ 4517381 (+)
G159685 NA other upstream 3749439 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 5194192 3018776 ~ 3043773 (+)
G161986 NA other downstream 304978 8544582 ~ 8548325 (+)
G162137 NA other downstream 328406 8568010 ~ 8571726 (+)
G162449 NA other downstream 1116799 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 1803189 10039358 ~ 10047210 (+)
G162297 NA other downstream 1893695 10133299 ~ 10221224 (+)

Expression


Co-expression Network