G162008


Basic Information

Item Value
gene id G162008
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8349401 ~ 8350756 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU183949
AGCAACACTGATATTAACACATGAAGAGTTCAGAGCAGGTTTCTGTTGAGCTCAAAGTTAAAGTGTAGATCATTAGCTGCAAAAACATGTCCTGTCTGACAAACTGAACAACTAACCACAGACAACAGCTTGTGGTGGTGAGATTAAAATGGGCGCCAAACATTCAGAATCTCTTCTGTTTGAAAAAAAGGGAAGTCTATCTATATAACACTTGAAAAAAGTTATCCGTTAACTTCACCATTCATATACAGAAATCATTTCACTTTTAACAAGTGTTTTCTCAACATTGCAGATATATTTATTCATGCTGCCTGAGAATTTCAAACTGAGAGTTTCAACAAAGTGAAATTTCAGCAATGAACCTCCAGCTTCACCATCAACTCCAACATCACACTCTGGAGTCACAACCAACTCAAATAAGCACTCGTTACAACCGAGGTCTGCAGAAGAGCATCTCTGAACGCACAACACGTCCAACCTTGAAGCAGATGATCTACAGCAGCAGCAGAAACACCGGTGTCACTCCTGTCAGCTGAGAACAGCAAACTGAGGCTACAGTTCACACAGACTCACCAACACTAGACAATAGAAGATTGTAAAAACGTTGCCTGGTCTGATGAGTCTCGATTTATGCTAATGTTTTCAGGCAACAGATAAACAATATTTTGATACACAATATTAGTCTTCACTGAATGTGTTGATAGTTCACAGCTGTCTCTGTTCTGCCCACATCCAGCAATGATTTCTGTTAGAGACGGAGAGAAACATTCATATCACAAATTAATAAGTAATCTGATCTATAACTAAAACCCTGTTGAATAGGTTGTAATTGAAAATTTTTCCACCAATGTGGGCGAAAGTAGCCTATAGTATACTCTGACAGACTCCCACACAGAGTGATCAGATAAACTGATCACTGACCTGTGGCAGATCTCCCATCTGAAGACAGTAGATGATCTGTGTGTATTCAGACTCTGTGATTTTCAGATCTACAAACACATTAATATGTGGATCAGCGTGAGGAGAATTTGTGTAATAACATATACAGCATCTTAATGTACTCTGAAGCGGATGTGTACGGAATGTTGGTTCAGCGTAATGCATGTCTTAACTGTCTTAACTGTTAATAATAATCAGACATTTAATAAATTAACATACACATAATTAACTTGAAATGGTCATTTTAAAAATATATATATTTTTGCAAATCAATTCTTGCCTTTGTTTCCTGGTTGTTTACAGTTTCTGTGGTAAATCAAACCTGCAACTACAGCTATGACCACCAGCAGCAGCGGCGCTATAAGAGCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107687542

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU183949 True 1308 lncRNA 0.38 2 8349401 8350756

Neighbor

gene id symbol gene type direction distance location
CI01000030_08168074_08174577 NA coding upstream 174739 8167927 ~ 8174662 (+)
CI01000030_08159242_08166884 GLS2B coding upstream 182456 8159242 ~ 8166945 (+)
CI01000030_08155452_08158318 RDH5 coding upstream 190692 8155452 ~ 8158709 (+)
CI01000030_08150901_08154024 GM7936 coding upstream 195377 8150901 ~ 8154024 (+)
CI01000030_08133065_08140755 RBCK1 coding upstream 208403 8133065 ~ 8140998 (+)
CI01000030_08555726_08559327 MMYHEMB1 coding downstream 204623 8555379 ~ 8559397 (+)
CI01000030_08763819_08775586 NA coding downstream 412974 8763730 ~ 8775772 (+)
CI01000030_08837486_08838040 NA coding downstream 486465 8837221 ~ 8838451 (+)
CI01000030_08845484_08861801 NA coding downstream 494728 8845484 ~ 8861801 (+)
CI01000030_08862264_08875155 NA coding downstream 511508 8862264 ~ 8875155 (+)
G162108 NA non-coding upstream 2148 8346924 ~ 8347253 (+)
G162105 NA non-coding upstream 49546 8299621 ~ 8299855 (+)
G162103 NA non-coding upstream 65873 8283059 ~ 8283528 (+)
G162097 NA non-coding upstream 78987 8270074 ~ 8270414 (+)
G162092 NA non-coding upstream 99099 8249998 ~ 8250302 (+)
G162110 NA non-coding downstream 12387 8363143 ~ 8363451 (+)
G162112 NA non-coding downstream 19649 8370405 ~ 8370820 (+)
G162114 NA non-coding downstream 23850 8374606 ~ 8375249 (+)
G162115 NA non-coding downstream 25575 8376331 ~ 8379167 (+)
G161983 NA non-coding downstream 41231 8391987 ~ 8394543 (+)
G162088 NA other upstream 109797 8237965 ~ 8239604 (+)
CI01000030_07868597_07886123 NA other upstream 476629 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 1146916 7200104 ~ 7202485 (+)
G159816 NA other upstream 3832294 4516778 ~ 4517381 (+)
G159685 NA other upstream 3860875 4431800 ~ 4488526 (+)
G161986 NA other downstream 193826 8544582 ~ 8548325 (+)
G162137 NA other downstream 217254 8568010 ~ 8571726 (+)
G162449 NA other downstream 1005647 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 1692037 10039358 ~ 10047210 (+)
G162297 NA other downstream 1782543 10133299 ~ 10221224 (+)

Expression


Co-expression Network