Gene
RNA
| Item | Value |
|---|---|
| gene id | G161984 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 8396642 ~ 8399635 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| nucleobindin-2-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU183918 | True | 983 | lncRNA | 0.40 | 3 | 8396642 | 8399635 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_08168074_08174577 | NA | coding | upstream | 221980 | 8167927 ~ 8174662 (+) |
| CI01000030_08159242_08166884 | GLS2B | coding | upstream | 229697 | 8159242 ~ 8166945 (+) |
| CI01000030_08155452_08158318 | RDH5 | coding | upstream | 237933 | 8155452 ~ 8158709 (+) |
| CI01000030_08150901_08154024 | GM7936 | coding | upstream | 242618 | 8150901 ~ 8154024 (+) |
| CI01000030_08133065_08140755 | RBCK1 | coding | upstream | 255644 | 8133065 ~ 8140998 (+) |
| CI01000030_08555726_08559327 | MMYHEMB1 | coding | downstream | 155744 | 8555379 ~ 8559397 (+) |
| CI01000030_08763819_08775586 | NA | coding | downstream | 364095 | 8763730 ~ 8775772 (+) |
| CI01000030_08837486_08838040 | NA | coding | downstream | 437586 | 8837221 ~ 8838451 (+) |
| CI01000030_08845484_08861801 | NA | coding | downstream | 445849 | 8845484 ~ 8861801 (+) |
| CI01000030_08862264_08875155 | NA | coding | downstream | 462629 | 8862264 ~ 8875155 (+) |
| G161983 | NA | non-coding | upstream | 2099 | 8391987 ~ 8394543 (+) |
| G162115 | NA | non-coding | upstream | 17475 | 8376331 ~ 8379167 (+) |
| G162114 | NA | non-coding | upstream | 21393 | 8374606 ~ 8375249 (+) |
| G162112 | NA | non-coding | upstream | 25822 | 8370405 ~ 8370820 (+) |
| G162110 | NA | non-coding | upstream | 33191 | 8363143 ~ 8363451 (+) |
| G162019 | NA | non-coding | downstream | 38000 | 8437635 ~ 8440740 (+) |
| G162116 | NA | non-coding | downstream | 50288 | 8449923 ~ 8450670 (+) |
| G162117 | NA | non-coding | downstream | 51157 | 8450792 ~ 8451627 (+) |
| G161988 | NA | non-coding | downstream | 64142 | 8463777 ~ 8466284 (+) |
| G162009 | NA | non-coding | downstream | 70231 | 8469866 ~ 8478940 (+) |
| G162088 | NA | other | upstream | 157038 | 8237965 ~ 8239604 (+) |
| CI01000030_07868597_07886123 | NA | other | upstream | 523870 | 7868292 ~ 7886228 (+) |
| CI01000030_07200104_07202258 | GCGA | other | upstream | 1194157 | 7200104 ~ 7202485 (+) |
| G159816 | NA | other | upstream | 3879535 | 4516778 ~ 4517381 (+) |
| G159685 | NA | other | upstream | 3908116 | 4431800 ~ 4488526 (+) |
| G161986 | NA | other | downstream | 144947 | 8544582 ~ 8548325 (+) |
| G162137 | NA | other | downstream | 168375 | 8568010 ~ 8571726 (+) |
| G162449 | NA | other | downstream | 956768 | 9356403 ~ 9357014 (+) |
| CI01000030_10039688_10047019 | NA | other | downstream | 1643158 | 10039358 ~ 10047210 (+) |
| G162297 | NA | other | downstream | 1733664 | 10133299 ~ 10221224 (+) |
