Gene
RNA
| Item | Value |
|---|---|
| gene id | G162138 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 8563117 ~ 8564920 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU184112 | True | 1198 | lncRNA | 0.47 | 4 | 8563117 | 8564920 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_08555726_08559327 | MMYHEMB1 | coding | upstream | 3720 | 8555379 ~ 8559397 (+) |
| CI01000030_08168074_08174577 | NA | coding | upstream | 388455 | 8167927 ~ 8174662 (+) |
| CI01000030_08159242_08166884 | GLS2B | coding | upstream | 396172 | 8159242 ~ 8166945 (+) |
| CI01000030_08155452_08158318 | RDH5 | coding | upstream | 404408 | 8155452 ~ 8158709 (+) |
| CI01000030_08150901_08154024 | GM7936 | coding | upstream | 409093 | 8150901 ~ 8154024 (+) |
| CI01000030_08763819_08775586 | NA | coding | downstream | 198810 | 8763730 ~ 8775772 (+) |
| CI01000030_08837486_08838040 | NA | coding | downstream | 272301 | 8837221 ~ 8838451 (+) |
| CI01000030_08845484_08861801 | NA | coding | downstream | 280564 | 8845484 ~ 8861801 (+) |
| CI01000030_08862264_08875155 | NA | coding | downstream | 297344 | 8862264 ~ 8875155 (+) |
| CI01000030_08875265_08877569 | NA | coding | downstream | 310345 | 8875265 ~ 8877569 (+) |
| G162016 | NA | non-coding | upstream | 33366 | 8477767 ~ 8529751 (+) |
| G162009 | NA | non-coding | upstream | 84177 | 8469866 ~ 8478940 (+) |
| G161988 | NA | non-coding | upstream | 96833 | 8463777 ~ 8466284 (+) |
| G162117 | NA | non-coding | upstream | 111490 | 8450792 ~ 8451627 (+) |
| G162142 | NA | non-coding | downstream | 29898 | 8594818 ~ 8596250 (+) |
| G162143 | NA | non-coding | downstream | 31421 | 8596341 ~ 8596770 (+) |
| G162145 | NA | non-coding | downstream | 32214 | 8597134 ~ 8599811 (+) |
| G162150 | NA | non-coding | downstream | 40811 | 8605731 ~ 8605956 (+) |
| G162152 | NA | non-coding | downstream | 43433 | 8608353 ~ 8608606 (+) |
| G161986 | NA | other | upstream | 14792 | 8544582 ~ 8548325 (+) |
| G162088 | NA | other | upstream | 323513 | 8237965 ~ 8239604 (+) |
| CI01000030_07868597_07886123 | NA | other | upstream | 690345 | 7868292 ~ 7886228 (+) |
| CI01000030_07200104_07202258 | GCGA | other | upstream | 1360632 | 7200104 ~ 7202485 (+) |
| G159816 | NA | other | upstream | 4046010 | 4516778 ~ 4517381 (+) |
| G162137 | NA | other | downstream | 3090 | 8568010 ~ 8571726 (+) |
| G162449 | NA | other | downstream | 791483 | 9356403 ~ 9357014 (+) |
| CI01000030_10039688_10047019 | NA | other | downstream | 1477873 | 10039358 ~ 10047210 (+) |
| G162297 | NA | other | downstream | 1568379 | 10133299 ~ 10221224 (+) |
| CI01000030_10473378_10509560 | NA | other | downstream | 1926526 | 10471835 ~ 10511071 (+) |
