G162194


Basic Information

Item Value
gene id G162194
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8728684 ~ 8729518 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184187
TTTTCCCATTTTATTATTCCAAATATTTCCCAACATACAACAAAAAGGCATCAAGACATGATAATTTTCAATTACAGCCTAGCAGAGATTTGTATAACAAAAAATTTGGCTACACATCAAATCAATTAGGCCATTCAATGGCTTTACAATAAGTGCAATAACTTTTCATTTTAATTGCAAATCCTTAATAATTTCACATTAAAACAATTATCTGGGCCTCCATAACTGGAAATATTCAACACCCATATCAGCTTTCACTAAAGGCAAGTAAACAGCAGTTTATCATAACCTACCCTAATGTAAACAGAGTATCAGAGTGAGTAAATTACGTATCTTAAAATATACTTACAGAGCAACAATGAGGCAGTTTCCATAACACTATGAAAAAAAAGACTTAAGAAAATAAGCATGTGCATATTATTACCCCCAAAACAGGCTCGTCCTGCACATGAAAAAAAGCATCAATCACACAATTCCCTCTTTAGCCCTCTAAAGCATGATTTGAATCACTAAGGAAAATAATATTTTTAAAGATGAAACCTGCCGTTGTTGTCATTTGACCTTGAAAACATCCACCTTAAAAAGCTGCAGTGAACAGTCCCACCAGCCAACATGATTATGTACTGAAAACAGGTAATTAAACACTTTTAAAACAAAGAATTGTACCATAATATAACAGGATCATTGATCAACATGTAGTGCAAACCATTCCAGCAAATGCACAAAATATATGTTCTCGGTTTATGCCAAAGAAGCCGTTCACAGAAGTTCACAACTGGTTGATTTCAACCACAGCTCGTGTTCATGTTACAGAGGCTCTGAACTACTGCTGTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU184187 True 835 lncRNA 0.34 1 8728684 8729518

Neighbor

gene id symbol gene type direction distance location
CI01000030_08555726_08559327 MMYHEMB1 coding upstream 169287 8555379 ~ 8559397 (+)
CI01000030_08168074_08174577 NA coding upstream 554022 8167927 ~ 8174662 (+)
CI01000030_08159242_08166884 GLS2B coding upstream 561739 8159242 ~ 8166945 (+)
CI01000030_08155452_08158318 RDH5 coding upstream 569975 8155452 ~ 8158709 (+)
CI01000030_08150901_08154024 GM7936 coding upstream 574660 8150901 ~ 8154024 (+)
CI01000030_08763819_08775586 NA coding downstream 34212 8763730 ~ 8775772 (+)
CI01000030_08837486_08838040 NA coding downstream 107703 8837221 ~ 8838451 (+)
CI01000030_08845484_08861801 NA coding downstream 115966 8845484 ~ 8861801 (+)
CI01000030_08862264_08875155 NA coding downstream 132746 8862264 ~ 8875155 (+)
CI01000030_08875265_08877569 NA coding downstream 145747 8875265 ~ 8877569 (+)
G162007 NA non-coding upstream 17325 8709003 ~ 8711359 (+)
G162185 NA non-coding upstream 32627 8695773 ~ 8696057 (+)
G162170 NA non-coding upstream 75860 8649647 ~ 8652824 (+)
G162166 NA non-coding upstream 97304 8631023 ~ 8631380 (+)
G162165 NA non-coding upstream 97750 8630732 ~ 8630934 (+)
G162197 NA non-coding downstream 547 8730065 ~ 8730362 (+)
G162199 NA non-coding downstream 3173 8732691 ~ 8732995 (+)
G162189 NA non-coding downstream 4069 8733587 ~ 8741314 (+)
G162208 NA non-coding downstream 13940 8743458 ~ 8743789 (+)
G162223 NA non-coding downstream 56610 8786128 ~ 8786927 (+)
G162137 NA other upstream 156958 8568010 ~ 8571726 (+)
G161986 NA other upstream 180359 8544582 ~ 8548325 (+)
G162088 NA other upstream 489080 8237965 ~ 8239604 (+)
CI01000030_07868597_07886123 NA other upstream 855912 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 1526199 7200104 ~ 7202485 (+)
G162449 NA other downstream 626885 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 1313275 10039358 ~ 10047210 (+)
G162297 NA other downstream 1403781 10133299 ~ 10221224 (+)
CI01000030_10473378_10509560 NA other downstream 1761928 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 2009063 10738087 ~ 10751548 (+)

Expression


Co-expression Network