Gene
RNA
| Item | Value |
|---|---|
| gene id | G162189 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 8733587 ~ 8741314 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU184181 | False | 807 | lncRNA | 0.33 | 2 | 8733587 | 8741314 |
| TU184182 | True | 706 | lncRNA | 0.33 | 2 | 8733587 | 8741213 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_08555726_08559327 | MMYHEMB1 | coding | upstream | 174190 | 8555379 ~ 8559397 (+) |
| CI01000030_08168074_08174577 | NA | coding | upstream | 558925 | 8167927 ~ 8174662 (+) |
| CI01000030_08159242_08166884 | GLS2B | coding | upstream | 566642 | 8159242 ~ 8166945 (+) |
| CI01000030_08155452_08158318 | RDH5 | coding | upstream | 574878 | 8155452 ~ 8158709 (+) |
| CI01000030_08150901_08154024 | GM7936 | coding | upstream | 579563 | 8150901 ~ 8154024 (+) |
| CI01000030_08763819_08775586 | NA | coding | downstream | 22416 | 8763730 ~ 8775772 (+) |
| CI01000030_08837486_08838040 | NA | coding | downstream | 95907 | 8837221 ~ 8838451 (+) |
| CI01000030_08845484_08861801 | NA | coding | downstream | 104170 | 8845484 ~ 8861801 (+) |
| CI01000030_08862264_08875155 | NA | coding | downstream | 120950 | 8862264 ~ 8875155 (+) |
| CI01000030_08875265_08877569 | NA | coding | downstream | 133951 | 8875265 ~ 8877569 (+) |
| G162199 | NA | non-coding | upstream | 592 | 8732691 ~ 8732995 (+) |
| G162197 | NA | non-coding | upstream | 3225 | 8730065 ~ 8730362 (+) |
| G162194 | NA | non-coding | upstream | 4069 | 8728684 ~ 8729518 (+) |
| G162007 | NA | non-coding | upstream | 22228 | 8709003 ~ 8711359 (+) |
| G162185 | NA | non-coding | upstream | 37530 | 8695773 ~ 8696057 (+) |
| G162208 | NA | non-coding | downstream | 2144 | 8743458 ~ 8743789 (+) |
| G162223 | NA | non-coding | downstream | 44814 | 8786128 ~ 8786927 (+) |
| G162230 | NA | non-coding | downstream | 58962 | 8800276 ~ 8800565 (+) |
| G162192 | NA | non-coding | downstream | 59933 | 8801247 ~ 8803792 (+) |
| G162232 | NA | non-coding | downstream | 64180 | 8805494 ~ 8805958 (+) |
| G162137 | NA | other | upstream | 161861 | 8568010 ~ 8571726 (+) |
| G161986 | NA | other | upstream | 185262 | 8544582 ~ 8548325 (+) |
| G162088 | NA | other | upstream | 493983 | 8237965 ~ 8239604 (+) |
| CI01000030_07868597_07886123 | NA | other | upstream | 860815 | 7868292 ~ 7886228 (+) |
| CI01000030_07200104_07202258 | GCGA | other | upstream | 1531102 | 7200104 ~ 7202485 (+) |
| G162449 | NA | other | downstream | 615089 | 9356403 ~ 9357014 (+) |
| CI01000030_10039688_10047019 | NA | other | downstream | 1301479 | 10039358 ~ 10047210 (+) |
| G162297 | NA | other | downstream | 1391985 | 10133299 ~ 10221224 (+) |
| CI01000030_10473378_10509560 | NA | other | downstream | 1750132 | 10471835 ~ 10511071 (+) |
| CI01000030_10738658_10751094 | NA | other | downstream | 1997267 | 10738087 ~ 10751548 (+) |
