G162190


Basic Information

Item Value
gene id G162190
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9149706 ~ 9150384 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184183
CATCTTGGATGACATGGGGGTGAGTAAATTTTAATTCTGAAGTGAACTAATCCTTTAAGTGCCCAAATACTTTTAGGGCTGGTGTATGAATACATGATTATGTGTGCATGAAGGTGTGACTGAACATGAATGTGCGTGACGAATCTTTCATCATTTGTGCGATGTAGCTGGTCTGTTTCTGGACGAAAAACTTTCCAGGATCAGGAATGTAACAAACCAAAGAGTTTGTATTGTTGGGTGGACCAGACCGATCGCTCGTACGAGATTCCAGTCATGAACGCTAACTATTCTAACTGTGCGTGCGTATGTGTGCATGTGTGTTTGTTCAAGTGAGACTGTTATTCTTCTGTCTTTATTTTGATTGTTAATGAAAATTTAACTGCATTTAACAACTTATTATTGTTCAGTTGAATTCTGTACTTGCGAGACGTATTTGTTAATGTCGCAAACTTCATATCAAAGCACAAATAAGACCACCGATATGTAAAGGTGATGTTAAAGAATGATAAAATATTCTTATCAGTGTTATCATGATAATCAGCAGATTCATTATTACTCTGTTAAACTTTCCTTTGTTTTCGTTTTTTACTACAAACATACATATTGCCTGATAGTGCAGTCGGCAGATAATAGGCTGTTCTATTTATCTATGAAGGTATAATAAATATTCATAATTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184183 True 679 lncRNA 0.35 1 9149706 9150384

Neighbor

gene id symbol gene type direction distance location
CI01000030_09086896_09146359 ASIC1, ASIC1B coding upstream 3347 9086896 ~ 9146359 (+)
CI01000030_09065536_09066102 NA coding upstream 83557 9065138 ~ 9066149 (+)
CI01000030_08970358_08975052 NA coding upstream 174613 8969392 ~ 8975093 (+)
CI01000030_08951137_08953545 NA coding upstream 196043 8949978 ~ 8953663 (+)
CI01000030_08906500_08914084 NA coding upstream 235622 8906500 ~ 8914084 (+)
CI01000030_09158208_09166948 SMARCD1.L, SMARCD1 coding downstream 7824 9158208 ~ 9168173 (+)
CI01000030_09169745_09175576 GPD1A, GPD1, GPD1B coding downstream 19265 9169649 ~ 9176231 (+)
CI01000030_09181881_09195357 NA coding downstream 31497 9181881 ~ 9196033 (+)
CI01000030_09214411_09224921 NA coding downstream 63896 9214280 ~ 9224941 (+)
CI01000030_09241979_09249271 NA coding downstream 91253 9241637 ~ 9249285 (+)
G162202 NA non-coding upstream 110118 9031877 ~ 9039588 (+)
G162257 NA non-coding upstream 200013 8949464 ~ 8949693 (+)
G162256 NA non-coding upstream 201366 8947858 ~ 8948340 (+)
G162255 NA non-coding upstream 202008 8946558 ~ 8947698 (+)
G162254 NA non-coding upstream 203369 8946122 ~ 8946337 (+)
G162389 NA non-coding downstream 49850 9200234 ~ 9242739 (+)
G162432 NA non-coding downstream 85180 9235564 ~ 9236563 (+)
G162438 NA non-coding downstream 131144 9281528 ~ 9281835 (+)
G162439 NA non-coding downstream 132474 9282858 ~ 9283089 (+)
G162441 NA non-coding downstream 134000 9284384 ~ 9284611 (+)
G162137 NA other upstream 577980 8568010 ~ 8571726 (+)
G161986 NA other upstream 601381 8544582 ~ 8548325 (+)
G162088 NA other upstream 910102 8237965 ~ 8239604 (+)
CI01000030_07868597_07886123 NA other upstream 1276934 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 1947221 7200104 ~ 7202485 (+)
G162449 NA other downstream 206019 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 892409 10039358 ~ 10047210 (+)
G162297 NA other downstream 982915 10133299 ~ 10221224 (+)
CI01000030_10473378_10509560 NA other downstream 1341062 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 1588197 10738087 ~ 10751548 (+)

Expression


Co-expression Network