Gene
RNA
| Item | Value |
|---|---|
| gene id | G162389 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 9200234 ~ 9242739 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU184419 | True | 3646 | lncRNA | 0.38 | 2 | 9200234 | 9242739 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_09181881_09195357 | NA | coding | upstream | 4201 | 9181881 ~ 9196033 (+) |
| CI01000030_09169745_09175576 | GPD1A, GPD1, GPD1B | coding | upstream | 24003 | 9169649 ~ 9176231 (+) |
| CI01000030_09158208_09166948 | SMARCD1.L, SMARCD1 | coding | upstream | 32061 | 9158208 ~ 9168173 (+) |
| CI01000030_09086896_09146359 | ASIC1, ASIC1B | coding | upstream | 53875 | 9086896 ~ 9146359 (+) |
| CI01000030_09065536_09066102 | NA | coding | upstream | 134085 | 9065138 ~ 9066149 (+) |
| CI01000030_09259092_09261043 | NA | coding | downstream | 15477 | 9258216 ~ 9261043 (+) |
| CI01000030_09300172_09306760 | NA | coding | downstream | 57066 | 9299805 ~ 9307374 (+) |
| CI01000030_09308467_09315467 | NA | coding | downstream | 65073 | 9307812 ~ 9316060 (+) |
| CI01000030_09321409_09339033 | NA | coding | downstream | 78601 | 9321340 ~ 9339964 (+) |
| CI01000030_09361364_09379014 | NA | coding | downstream | 118296 | 9361035 ~ 9379721 (+) |
| G162190 | NA | non-coding | upstream | 49850 | 9149706 ~ 9150384 (+) |
| G162202 | NA | non-coding | upstream | 160646 | 9031877 ~ 9039588 (+) |
| G162257 | NA | non-coding | upstream | 250541 | 8949464 ~ 8949693 (+) |
| G162256 | NA | non-coding | upstream | 251894 | 8947858 ~ 8948340 (+) |
| G162255 | NA | non-coding | upstream | 252536 | 8946558 ~ 8947698 (+) |
| G162438 | NA | non-coding | downstream | 38789 | 9281528 ~ 9281835 (+) |
| G162439 | NA | non-coding | downstream | 40119 | 9282858 ~ 9283089 (+) |
| G162441 | NA | non-coding | downstream | 41645 | 9284384 ~ 9284611 (+) |
| G162318 | NA | non-coding | downstream | 88707 | 9331446 ~ 9333904 (+) |
| G162137 | NA | other | upstream | 628508 | 8568010 ~ 8571726 (+) |
| G161986 | NA | other | upstream | 651909 | 8544582 ~ 8548325 (+) |
| G162088 | NA | other | upstream | 960630 | 8237965 ~ 8239604 (+) |
| CI01000030_07868597_07886123 | NA | other | upstream | 1327462 | 7868292 ~ 7886228 (+) |
| CI01000030_07200104_07202258 | GCGA | other | upstream | 1997749 | 7200104 ~ 7202485 (+) |
| G162449 | NA | other | downstream | 113664 | 9356403 ~ 9357014 (+) |
| CI01000030_10039688_10047019 | NA | other | downstream | 800054 | 10039358 ~ 10047210 (+) |
| G162297 | NA | other | downstream | 890560 | 10133299 ~ 10221224 (+) |
| CI01000030_10473378_10509560 | NA | other | downstream | 1248707 | 10471835 ~ 10511071 (+) |
| CI01000030_10738658_10751094 | NA | other | downstream | 1495842 | 10738087 ~ 10751548 (+) |
