G162318


Basic Information

Item Value
gene id G162318
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9331446 ~ 9333904 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184348
TATATTTTGTATCAAATACAATGTGTTTTTCACTGATCAAGATCTGGAATTCTGGAGATCTGAAATCTGGAACAGCATATTTCTCCTTTCGGGCAAGTGATTCGCAAACAGCTTTCCTTGTGCATGAAATTCCCCATAAACCAGCAAACCAATGAGAATGTAGGACAATGATGACGATATATAACAACAGACTGTAGGCGCCAAAGCTGCTGTAGATCCGCTTACATGAACTCATTGAGTGCTAGATTTGAAAAAAATTACCATCTTCTGGCAAACAAATAAATAAATGATGGAGAGTTACATAGTTATTACCAACATTTTATCATGTAAGCTTTATGGTACACCTCAAACAAGGGAATTTATTGTAATTTAGTGTTAATGTTAATTAGCAAGTCCACAAGCCATTTCATTTAAAAGAGTGGCCAAAATGCACAAAGTTTTAGTTTTTAGTTAAAAACAGTGTTGTGTAAATGGCCCCTTATACTACAAAAAGGCATAGAATAGTGCAAAAGTATTTTTTGTCTGATGCTAAAAATATAAATTAAAAGAATAGAAAGAATGATTGAACTATTAAAATATTCTAGTGTTTACAAAGATAATATGGCTGTAAAAGTTTAGTTAGCCATTTTGCTTCCACACTTGTAGTATGGTGAGATGCATCATATATGGATTTATATGGAATGCTGATCCGCAGCGTGTGAGCTGAAAATAAATACATATAATAAATATATTAGAGTTATTTCAGAGAACAAGTTGCTATGGCTACTTGCATACGCTGCAATTTATCTCAGTTTTTGTATCCGAAAGTTCTTAATCTGAGTATGTCGCATAACCTGCTTTCTGGAAAACCCTGCTCTTCACAGTGTAGCATGTACACAAATATGTATTTTTTTTTTTTCAAGACAGCTGTGAGTCAAACAATAAGTATTCAGGTATTGAATTAAGTCTGTACTGCTGATACTGTAGGTGTTGTTACTGGTATCATTCCTGATACTGGAAAATACTGATATTATTATATTGCTAATGTGCCTAGGCCTTATTTTAACCAGCAAGGTGCCGTTGGTCAACCATCTTCATCAAGAAAAAAACCCAAAACAAAACTATGAACTGTTGTAAAGTTGTTACTTAGTGTTAAGCTAATGAAAATACTTCATGTGATTGTCAGGAGAAATGTTACAGCACGATTGAAACGGTTGAAACACTTGTCAAACATAGCATTAAGTCAAACATGTTTGTGAACAAAACATTTGTGATATTTAAGTGTTGATCAGTTTATTTCTTTCATTCTCTTGACTCTTTACCTTTTATTATTAGTTTTTCTCTGGCTGCTCCAACTTTGTGTTTGTAAAGCACATTTGTTATGACCAGAGAAAATATGATCTGGTCACAAAATGTTTTGGTGATGACATTATTATCATGCAAAGGCCTGATGTCTTTTAGAGTCTAAATCTCTGACTGTATGCTTGATGTGTAGCTTTAGTGTTAGTGATTGTAGTCCTGTGATTTTACAGCTTGAGATCCAACAGCAGTATGAACAATATTTTTTCCTAAGAAAAATACATTATGCACAGAAGCTTCTGTGTTTAGACACACAGACATCAAGAATCAGCATATGATTCTCAAGAACGGTGACAATAAATAAATACAAAATACTTTCAAACAGATCAACTCTGAACATCACAAAACAAGCTACTGTCACAACAAAACAACAGAAAAATAAAAGCAAACATGAACAATCTACGAAAATTACAGGACAATTCAGCTGCATAATTTATTCATGCAGCAATGCATGATGGGAGCCATGGATGAGTTTTGATTGGTGGCTCCCATCATGCACTGCAACATGAAGCACTTTGTTTGATTGTCACCATTGTTGAGGGTCATATGCTGATTCTTGATGTCTGTGTGTGTTTCAAAAAACACTTAAGATTATAGAAACTCTGCTGGATCTCAAGCAGTAACAGATTTAGTGTAAAGAAATAATAGAACATCTATATAACAATACTGGATGTCACCAACGAATCTGGCCATTTCACAATGAGAATGTCATCATCAAAACACAACTGTGCTTCCCAAAGCATCGTAAACCTAAATTGATCAACTTTGGCTTACAACACTTTTGGGAAATGCAGCCCAGATCACAGTTTCTCTGGCCATAACAAATGTGCTCTACAAACACAAAGTTGGAGCAGCCAGAGAAAGAATAATGTTAATAAATAAAGAGTCAAGAGCCCAACTAAAGGAAATGCTTTTCACCATCATGGTGACTTCAAACTAAACTTTCATTAAAACATTAACATCTAAACATCTGTTAATTCTCAGTAAGAACTTTTGTTGATGTATTACAGAAATAAAATCAAACTGGTTAATAATAAGTGTAATAATGTTTAATGGCTGGAAGTCAGTTGTAGTTGTCGTGTCTCTCTCTTTTTCTCTTGTTGTTTCTTCAGTGATTCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184348 True 2459 lncRNA 0.34 1 9331446 9333904

Neighbor

gene id symbol gene type direction distance location
CI01000030_09308467_09315467 NA coding upstream 15386 9307812 ~ 9316060 (+)
CI01000030_09300172_09306760 NA coding upstream 24072 9299805 ~ 9307374 (+)
CI01000030_09259092_09261043 NA coding upstream 70403 9258216 ~ 9261043 (+)
CI01000030_09241979_09249271 NA coding upstream 82161 9241637 ~ 9249285 (+)
CI01000030_09214411_09224921 NA coding upstream 106505 9214280 ~ 9224941 (+)
CI01000030_09361364_09379014 NA coding downstream 27131 9361035 ~ 9379721 (+)
CI01000030_09509234_09514703 NA coding downstream 174685 9508589 ~ 9516002 (+)
CI01000030_09526436_09552770 NA coding downstream 192351 9526255 ~ 9554552 (+)
CI01000030_09598376_09634083 NA coding downstream 264250 9598154 ~ 9634480 (+)
CI01000030_09691687_09697272 NA coding downstream 356892 9690796 ~ 9697492 (+)
CI01000030_09321409_09339033 NA non-coding upstream 5453 9321340 ~ 9339964 (+)
G162441 NA non-coding upstream 46835 9284384 ~ 9284611 (+)
G162439 NA non-coding upstream 48357 9282858 ~ 9283089 (+)
G162438 NA non-coding upstream 49611 9281528 ~ 9281835 (+)
G162389 NA non-coding upstream 88707 9200234 ~ 9242739 (+)
G162449 NA non-coding downstream 22854 9356403 ~ 9357014 (+)
G162452 NA non-coding downstream 48374 9382278 ~ 9382506 (+)
G162454 NA non-coding downstream 55236 9389140 ~ 9389367 (+)
G162459 NA non-coding downstream 67946 9401850 ~ 9402063 (+)
G162460 NA non-coding downstream 71501 9405405 ~ 9405644 (+)
G162137 NA other upstream 759720 8568010 ~ 8571726 (+)
G161986 NA other upstream 783121 8544582 ~ 8548325 (+)
G162088 NA other upstream 1091842 8237965 ~ 8239604 (+)
CI01000030_07868597_07886123 NA other upstream 1458674 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 2128961 7200104 ~ 7202485 (+)
CI01000030_10039688_10047019 NA other downstream 708889 10039358 ~ 10047210 (+)
G162297 NA other downstream 799395 10133299 ~ 10221224 (+)
CI01000030_10473378_10509560 NA other downstream 1157542 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 1404677 10738087 ~ 10751548 (+)

Expression


Co-expression Network