XLOC_000893


Basic Information

Item Value
gene id XLOC_000893
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 59161965 ~ 59162831 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003278
aaagaaaattaaatcaaAAACGCATTAaatttcaattttcatttttaaattgtaaaacgaAAATCAGAAAACGACTTGTTTTACGTTTTTCAATATCTGTTTCTAAAATGAAACTCCAATGACTAAAAGATACGTCTCCTTATTTGAGTACTGCACGCCCTGTTCAACACATAAAACTAAACAGAACAAGACAGAGTCTAAAGCAAggctgcccaaactcggtcctggagggccgctgtcctgcatatttttgtttcaaccccaattaaacactcctgaacaagctaatcaagctgttTCTAGGTATACAAGAAagctacaagcaggtgtgtttaagaaagttggagctaaactatgcaggacagcggccctctaggaccgagttagacacccctgctctaaagaatCAAAACAAAAGAATCACAATAGTGAAGAATCAACTCTTTTGAATTGATTCAGAACtaatgatcagtgtgtgtgtgttttctctttgAAGTGTTTTATATGCAATAAATCTGCTGACAGCTGAACATGCGCATGATTCACTGCTGTTTTCTGTTCATTTAACACAAACTGCACTGCATTCAGCTGTTTTGTTCTCTGCTGAGATCGTGTTCAATACAGGCGGTCTaattaagagatttttttttgttcatgatGTGTGTTTGATACGTAATTTGATGAGtttactgtttttaattttaatgttttcaaattaATATTTAGCTCATTTGCGAGTGTGCTTTgagtgtataaaataaaaaaagaatcacTACAATGGTGAAGAATCAACTCTTTGAATCGATTCAGAACTAATggacagtgtgtttgtgttttctccttgaagtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
ko03015 mRNA surveillance pathway
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003278 True 867 lncRNA 0.36 1 59161965 59162831

Neighbor

gene id symbol gene type direction distance location
XLOC_000892 soul5l coding upstream 3888 59154521 ~ 59158077 (+)
XLOC_000891 gpr108 coding upstream 10907 59146298 ~ 59151058 (+)
XLOC_000890 gpr108 coding upstream 15949 59142783 ~ 59146016 (+)
XLOC_000889 NA coding upstream 23371 59137883 ~ 59138594 (+)
XLOC_000888 FP015850.1 coding upstream 30559 59131292 ~ 59131406 (+)
XLOC_000894 NA coding downstream 85299 59248130 ~ 59251679 (+)
XLOC_000895 rdh8b coding downstream 131042 59293873 ~ 59303460 (+)
XLOC_000896 NA coding downstream 149699 59312530 ~ 59313528 (+)
XLOC_000897 parn coding downstream 151844 59314675 ~ 59324539 (+)
XLOC_000898 CABZ01052576.1 coding downstream 165199 59328030 ~ 59335940 (+)
XLOC_000879 NA non-coding upstream 185278 58975017 ~ 58976687 (+)
XLOC_000878 NA non-coding upstream 202508 58956066 ~ 58959457 (+)
XLOC_000876 NA non-coding upstream 307588 58853170 ~ 58854377 (+)
XLOC_000899 FP236157.1 non-coding downstream 357469 59520300 ~ 59522571 (+)
XLOC_000901 NA non-coding downstream 382798 59545629 ~ 59547121 (+)

Expression


Co-expression Network