Gene
RNA
| Item | Value |
|---|---|
| gene id | G162488 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 9504774 ~ 9506212 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU184541 | False | 435 | lncRNA | 0.46 | 2 | 9504774 | 9506212 |
| TU184542 | True | 367 | lncRNA | 0.47 | 2 | 9504774 | 9506144 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_09361364_09379014 | NA | coding | upstream | 125053 | 9361035 ~ 9379721 (+) |
| CI01000030_09321409_09339033 | NA | coding | upstream | 164810 | 9321340 ~ 9339964 (+) |
| CI01000030_09308467_09315467 | NA | coding | upstream | 188714 | 9307812 ~ 9316060 (+) |
| CI01000030_09300172_09306760 | NA | coding | upstream | 197400 | 9299805 ~ 9307374 (+) |
| CI01000030_09259092_09261043 | NA | coding | upstream | 243731 | 9258216 ~ 9261043 (+) |
| CI01000030_09509234_09514703 | NA | coding | downstream | 2377 | 9508589 ~ 9516002 (+) |
| CI01000030_09526436_09552770 | NA | coding | downstream | 20043 | 9526255 ~ 9554552 (+) |
| CI01000030_09598376_09634083 | NA | coding | downstream | 91942 | 9598154 ~ 9634480 (+) |
| CI01000030_09691687_09697272 | NA | coding | downstream | 184584 | 9690796 ~ 9697492 (+) |
| CI01000030_09724422_09740444 | NA | coding | downstream | 218143 | 9724355 ~ 9740578 (+) |
| G162487 | NA | non-coding | upstream | 4883 | 9499416 ~ 9499891 (+) |
| G162486 | NA | non-coding | upstream | 6571 | 9497986 ~ 9498203 (+) |
| G162485 | NA | non-coding | upstream | 11218 | 9493314 ~ 9493556 (+) |
| G162484 | NA | non-coding | upstream | 16731 | 9487547 ~ 9488043 (+) |
| G162483 | NA | non-coding | upstream | 17595 | 9486466 ~ 9487179 (+) |
| G162500 | NA | non-coding | downstream | 33571 | 9539783 ~ 9540016 (+) |
| G162501 | NA | non-coding | downstream | 34556 | 9540768 ~ 9541065 (+) |
| G162503 | NA | non-coding | downstream | 38512 | 9544724 ~ 9544938 (+) |
| G162398 | NA | non-coding | downstream | 66216 | 9572428 ~ 9963252 (+) |
| G162449 | NA | other | upstream | 147760 | 9356403 ~ 9357014 (+) |
| G162137 | NA | other | upstream | 933048 | 8568010 ~ 8571726 (+) |
| G161986 | NA | other | upstream | 956449 | 8544582 ~ 8548325 (+) |
| G162088 | NA | other | upstream | 1265170 | 8237965 ~ 8239604 (+) |
| CI01000030_07868597_07886123 | NA | other | upstream | 1632002 | 7868292 ~ 7886228 (+) |
| CI01000030_10039688_10047019 | NA | other | downstream | 536581 | 10039358 ~ 10047210 (+) |
| G162297 | NA | other | downstream | 627087 | 10133299 ~ 10221224 (+) |
| CI01000030_10473378_10509560 | NA | other | downstream | 985234 | 10471835 ~ 10511071 (+) |
| CI01000030_10738658_10751094 | NA | other | downstream | 1232369 | 10738087 ~ 10751548 (+) |
| G162821 | NA | other | downstream | 1359800 | 10866012 ~ 10868440 (+) |
