G162501


Basic Information

Item Value
gene id G162501
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9540768 ~ 9541065 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184561
TGTCAAGTCACCTTTATTTATATAGCGCTTTTTACAATGTAGATTGTGTCAAAGCAGCTTTACATTGATAACTGGTACATTGTTTGGCTGCACAGCATCTCTTAAAGAATAGTGTCAATGCAGGCAGATCAAAAGCACTGTTGAATATCAAATGTCAAGTCAAGTGTCCCCAACTAAGCAAGCCAGAGGCGACAGCGGCAAGGAACCCAAACTCCATCAGGTGACATCAGGTGGCAGACAAGTGGCAAATTGGTGTTAAAATGGAGAAAAAAACCTTGGGAGAAACCAGGCTTAGTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU184561 True 298 lncRNA 0.42 1 9540768 9541065

Neighbor

gene id symbol gene type direction distance location
CI01000030_09509234_09514703 NA coding upstream 24766 9508589 ~ 9516002 (+)
CI01000030_09361364_09379014 NA coding upstream 161047 9361035 ~ 9379721 (+)
CI01000030_09321409_09339033 NA coding upstream 200804 9321340 ~ 9339964 (+)
CI01000030_09308467_09315467 NA coding upstream 224708 9307812 ~ 9316060 (+)
CI01000030_09300172_09306760 NA coding upstream 233394 9299805 ~ 9307374 (+)
CI01000030_09598376_09634083 NA coding downstream 57089 9598154 ~ 9634480 (+)
CI01000030_09691687_09697272 NA coding downstream 149731 9690796 ~ 9697492 (+)
CI01000030_09724422_09740444 NA coding downstream 183290 9724355 ~ 9740578 (+)
CI01000030_09754796_09761721 NA coding downstream 213508 9754573 ~ 9763742 (+)
CI01000030_09799840_09805801 NA coding downstream 256938 9798003 ~ 9805819 (+)
G162500 NA non-coding upstream 752 9539783 ~ 9540016 (+)
G162488 NA non-coding upstream 34556 9504774 ~ 9506212 (+)
G162487 NA non-coding upstream 40877 9499416 ~ 9499891 (+)
G162486 NA non-coding upstream 42565 9497986 ~ 9498203 (+)
G162485 NA non-coding upstream 47212 9493314 ~ 9493556 (+)
G162503 NA non-coding downstream 3659 9544724 ~ 9544938 (+)
CI01000030_09526436_09552770 NA non-coding downstream 6229 9526255 ~ 9554552 (+)
G162398 NA non-coding downstream 31363 9572428 ~ 9963252 (+)
G162413 NA non-coding downstream 47863 9588928 ~ 9592699 (+)
G162335 NA non-coding downstream 97473 9638538 ~ 9648574 (+)
G162449 NA other upstream 183754 9356403 ~ 9357014 (+)
G162137 NA other upstream 969042 8568010 ~ 8571726 (+)
G161986 NA other upstream 992443 8544582 ~ 8548325 (+)
G162088 NA other upstream 1301164 8237965 ~ 8239604 (+)
CI01000030_07868597_07886123 NA other upstream 1667996 7868292 ~ 7886228 (+)
CI01000030_10039688_10047019 NA other downstream 501728 10039358 ~ 10047210 (+)
G162297 NA other downstream 592234 10133299 ~ 10221224 (+)
CI01000030_10473378_10509560 NA other downstream 950381 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 1197516 10738087 ~ 10751548 (+)
G162821 NA other downstream 1324947 10866012 ~ 10868440 (+)

Expression


Co-expression Network