G162539


Basic Information

Item Value
gene id G162539
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9812537 ~ 9822015 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184604
GTACCTGCACATGTGTGACAGAGTTGAGTGATGTCCAGATGTTGAGTCTGGTTGCTGATGGGATTGTTCAGCACACAGCTGTAGGTGTTTTTATCCTGATATTCCACCTCCAGAGGTAGAGAGAGACTGATGCTGAGATCAGACACACTGATGCTGGACAATAAACAGTTTCCTTTGTACCAGGAGAGAGTCACATGACTCACATTCACAGCTGAACACACCAATGAACAATTTGATGATGATGATGAAGAACATTGTGAAGAGTTACTGCTGATGACAGGAACAGGCAGACGAGCTGAAAAACATCAGAGAATAAAAGGAATACAGATAAATCATAAAAAAATGCTTGGTTTAATGCACTGAGTTGCTGTAAAATTACAGTATATAATGGGACTGCATGTTTTACTATCTATGTGTGCCTTGGCTACCTTGCTGACCGGTTTAACATAAGTTTCACCTGCTTTGGTGCAAATGAAAGTGAGAATAGGAGATGCAACAGCAAGACAACCCCCTAAAAGGGAATGATTTTGCAGGTGGAGGCCATAGACAATTGTTCTCTCCTTATTCTTCCTCAATGATTTGTCTTTAGTTTTGTGTTTTGTTAGGGTCCTTGTCACTGTCTGTAGCATGAGGCAGTACCTGCAGCACAATCAGGTTGCAC
>TU184605
GTACCTGCACATGTGTGACAGAGTTGAGTGATGTCCAGATGTTGAGTCTGGTTGGTGAATGAATTGTTCAGCACACAGCTGTAGGTGTTTTTATCCTGATATTCCACCTCCAGAGGTAGAGAGAGACTAATGCTGAGATCAGACGCACTGATGCTGGACAATAAACTGTTTCCTTTGTACCAGGAGAGAGTCACATGACCCACATTCACAGCTGAACACACCAATGAACAATTTGATGATGAAGAACATTGTGAAGAGTTACTGCTGATGACAGGAACAGGCAGACGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184604 False 661 lncRNA 0.42 2 9812537 9822015
TU184605 True 289 lncRNA 0.45 2 9812537 9821648

Neighbor

gene id symbol gene type direction distance location
CI01000030_09799840_09805801 NA coding upstream 6718 9798003 ~ 9805819 (+)
CI01000030_09754796_09761721 NA coding upstream 48795 9754573 ~ 9763742 (+)
CI01000030_09724422_09740444 NA coding upstream 71959 9724355 ~ 9740578 (+)
CI01000030_09691687_09697272 NA coding upstream 115045 9690796 ~ 9697492 (+)
CI01000030_09598376_09634083 NA coding upstream 178057 9598154 ~ 9634480 (+)
CI01000030_09847512_09854804 NA coding downstream 25407 9847422 ~ 9855676 (+)
CI01000030_09876738_09883981 NA coding downstream 53270 9875285 ~ 9884005 (+)
CI01000030_09922237_09930221 NA coding downstream 100034 9922049 ~ 9930368 (+)
CI01000030_09989586_10008913 NA coding downstream 167352 9989367 ~ 10009155 (+)
CI01000030_10039688_10047019 NA coding downstream 217343 10039358 ~ 10047210 (+)
G162359 NA non-coding upstream 95881 9711018 ~ 9716656 (+)
G162530 NA non-coding upstream 128873 9682368 ~ 9683664 (+)
G162335 NA non-coding upstream 163963 9638538 ~ 9648574 (+)
G162413 NA non-coding upstream 219838 9588928 ~ 9592699 (+)
G162546 NA non-coding downstream 8404 9830419 ~ 9857715 (+)
G162399 NA non-coding downstream 11663 9833678 ~ 9837829 (+)
G162550 NA non-coding downstream 37476 9859491 ~ 9863964 (+)
G162563 NA non-coding downstream 119873 9941888 ~ 9965500 (+)
G162449 NA other upstream 455523 9356403 ~ 9357014 (+)
G162137 NA other upstream 1240811 8568010 ~ 8571726 (+)
G161986 NA other upstream 1264212 8544582 ~ 8548325 (+)
G162088 NA other upstream 1572933 8237965 ~ 8239604 (+)
CI01000030_07868597_07886123 NA other upstream 1939765 7868292 ~ 7886228 (+)
G162297 NA other downstream 311284 10133299 ~ 10221224 (+)
CI01000030_10473378_10509560 NA other downstream 669431 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 916566 10738087 ~ 10751548 (+)
G162821 NA other downstream 1043997 10866012 ~ 10868440 (+)

Expression


Co-expression Network