G162297


Basic Information

Item Value
gene id G162297
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10133299 ~ 10221224 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184321
GGACACACTTATACACTCACAAGCAAACGGGAACTCTAGACACGCACATACATTTGAACATTAAACAACTCGTTATTATATTTCTTAATATACTATATATGGTAAAGTTTGACCTCTGAGTTCTATGATTGGATGGCCTGGACATCGTGGATGTGGATATTCTGCTTTATCTTGTGTATAAATATGACCCTTCTTACTTAATAATCTTGAGAATGTTATTGTATTACACTGTCTCTGTGTCTGCTTCATCATTCTCCCGGGATCTCGCGCCGCTGCTGCCACACATCACAGAGGTTGAGACGCCTGTTTCCAACTGACGACTGATATCTTCGAGATCTGCAGATAGTCTACCTGAAAATTAATCTAACACCAAGATTAAGCCTGACTGCATTCACTTGGACTCTGTGAAGGTACATCATAATAAAGGCCACGGCTTTTACTTCCCCTGACTACAGACTGCAACCTGTCATGGAGATTCATCAGTCTGCTGTGATTCTGCTGCTGATCTTGAGTGTGTCATCCTTCACTCATGGTCAACCAGACAACATAAAGCCCCGCTATAAAAAATTCCTCAATCAACATTTCGGTCCTAGTATGAATGAGCAGAAGTGTACCAGTGAAATCAAAACGAGAGCTATCACTGGAAATGATGGTGGCTGCAAACCTGTCAACACCTTCATACAAGCAAATTCAAATGATATTAAAGCAGTTTGTGGCAATGCAGGAACTCCACAGGGCGGGGACCTGTTTAAGAGCAACCAGCCTTTTCCGGTGATCACATGCAAATTACAAAGTGGGCAGAGACCCCCAAGATGTGAATATGGTAAAGGGAAGAAGTCCACTCGTTACATTGTGTTGGGGTGTGCAGAAGGCTGGCCTGTACACTATGAAGAAGGCATTACTGATGCAAAGAAGATAGGCTGAAAAGAGCCTCACAGAGCTTTAATTTTAAAAAATATTTTTTTTAAGTTAATGGTATATTCTGCACTTCTTCATGCATGTCTCTGTGTGCAATCATTCTTATGTGCAAGATTCAGCTAGTCTAATGAACTTTTAATCACTCTGTTAACACTTTTTGAGCATTAAAAAGCTTTTTAATGGGAGTAGTGAATGAGCAAAAACAGATGAGGGAAGAAAGACGCAGATGTTTTTTCCACCTGTCTGTAATCCTCAGTAAAACTTCTCTACCC
>TU184320
ATTACACTGTCTCTGTGTCTGCTTCATCATTCTCCCGAGATCTCGCGCCGCTGCTGCCACACATTACAGAGGTTGAGACGCCTGTTTCCAACTGACGACTGATATCTTCGAGATCTGCAGATAGTCTACCTGAAAATTAATCTAACACCAAGATTAAGCCTGACTGCATTCACTTGGAATTTGTGAAGTGCATCATAATACATCCCAGACTAGACTGCAACCTGTGAGTTTCAGTTCACACAAGCTCATTTTATAGTTTTGTAACATGTGCTTTGCTGTTCTGTTTAAAGCTGCAGTCCGTAAGTTTTTTGGTTAAAAATGATCCAAAATCAATTTTTGAGCAAGTACATCGCCTTACCTTACCCTGATTCACAACAGTAAGCTTGTAATAATGTTTTGTAATAAGAGCAGAACTGGTAGGTTTCACTGGATATTTAAGCATGACGCCGTTTGTCTTTGAGTCCCAGCTAGTAGGCTATATAGCATGTGATGATCCTGCTGGTAGGCGGATCATTTATAGCAGCTGAAATAGCTAAACTTATCATTTTGATGGTGGATTGTAATCCAGAAAGGTCCAAATGACAATCATCAGTGACAACTGGAGATTCACCCGTAGTCAAAAGCAAAAGACTTCGGACTGAGAAGTGGCTACAGAAATTGAAATCTACAGGTAATGCTAAAACACACTGAATACACATAGTCACGCAATGCTGATGTTGTTAACATTAACAATTTGAGAGCAAAGTATAACAATAATAATAATTTGCATGGTTTGGCATGATCTGAGCTAATCGATCGTTAGATTTAATCACCATTGGTAGAGCGATTTATTGTAATGCTTTTTTTTTTTTTTTCAGTTGGTCAGAACAAAAGTGGTTATACATGTTACTTGTTCAGATGACTTTTTTCCGGTGAAAATTCTTATTTTGGTCATACTTCTAAGACATAGAATCTGTGTTTCTGAAGTACAGTATCCGCACCGATGTGGTGACTGACAGCAAACAAACATTAGATTCATCTGCGCTGAGGAGTCGTGCCGATGCACAACACACATAAAAAGATAATTCTGCAAATAAACTACAATTGCAGGTTTCAAACAGAGATGGCGACAAAAAACTTACAGACTGCAGCTTTGAGTAGAATTTTTATTTTATTTTCCAAAGCATTGTAATAAGTATACAACAGCAACATATTTTGAGATGTTTTCTGGGGTAAATTGATTTTCTGGGGTTTGTGATTTACCTTGCTTTTAAATGTTAAGACATACAAGAAATGGAATTGGTGGAGATTGGTGGAGGTGGAAACAAAGTACAGTCAAAAACACTTTAACACAAATACAGAAAAACAAAGGGACTGGAACGGTCTATGTACAAAAACATGCACAGCTTGTTTAATGTAAAGCAACTACGATATGTGCACGTAAAAATAAAGGAAGGGTCTCTTCAGTATTTTCTTAATTAATCACATCTAAACTGCTTTAGTCAGTCAAATGTCAGTAAAGGTGTTTTAATGTATGTATTTTTCACAGGTCATGGAGATTCATCAGTCTGCTGTGATTCTGCTGCTGATCTTGAGTGTGTCATCCTTCACTCATGGTCAACCAGCAGATATAATGCCCCGCTATAAAAAATTCCTCAATCAGCATGTGGATCCATATATGACTGTGAATGATTGTACCAGTAAAATCGAAAACCGAGTCATCACTGGAACTGATAGTGGCTGCAAACCTGTCAACTCCTTCATAGTAGCAAATGCAGATACAATTAAAGCAGTTTGTGGCAAAGGAGGAACTGCAATAGGTGGAAATCTGTTTGAGAGCAACAACCCATTTTTTGTGGTCAAGTGTACAATAAAAAATAATAGTAAGGGAACTCCAAAGTGTGAATATCGTGGGAATGGTTTCACTCGTAAGATTGTGTTGGCCTGTCAAAAAGGCTGGCCTGTACATTATGAAAGGTAATGAACAGATGGCAGGCGGAAAAGAACGTCAGAGCTTTACAATGTCTTAATCATTTCTTCAAACCTACTTTTCTGTCTTTTGTTGTTTTTCAAGTACAAAAAAATAAATAAAAATCAGTGAATCAATCATGAGGTCAAAAATTAATATAATTTAATACAGGGTATTATAATCCTGGTTTAGGGTCAGGTTGTAACACATATGAAAACAGTTTTCCTTATTGTTCTTTATGATCAATGCAAATTACCTCACAAATAAATGAAGTATAACAATATAAGCAATATAACAGTTAATATAGGGGATATAATGTTACATATACTTTTTTTCCCCTTCTTTTTCTGTTTTTGGATAACGCATTTATATTTTTGATGATTTGAAAAAAAAAAACATATTGTATAATTTTTGTATATGTAACTATTTTTGTATGTAGTCTGGTATGTTAATGTTATACACATATGGGTTTTTATGCAATTGAGGTATATGCACTTTTAAAAGATTTTTTGAGCTTACAAAATTGGATGTAATACAGTAAAATGATGTACTTAATTATGTAACACTCTTATTTTAACACTTTAACAATCTTGAGTATGGTCTCACATATACTCCCAGAGGAGTTAATTTAACACTGGAGTTTTTGTATAGATACTGTGTTAACAATGCTAATGATTGAGGATCTTACCTAATAAAACAAAAAACATCTATGGTCTAAAGAGAGTCTAGAATATTGTGCTGCTTGTGACTGAGTGAAAAACCTGGACGTGTTTGTTAAAGTAGGTTTTTAAAATAAACTCTGATGTTTAATGAATGATTCGATTGACAGTGGTGGTCCTAGAGGCAAAGCTGTTCAGAATGAGTTCTCTAGCATATGTAATGGATCATGCGCATGTGTGAAAAATCAGGTAATAGGCCTATACAATCATTTACCCGGATGAAAAATGCGATGGCGCCCCCAGTGGCTGGTTTCTTTAAAGTTTCTCACAGGCCTCTAGACTCTAGGGTCGTGAATCAAACAGGACTAACAAGTTTTGCTCTGATCAGTTAACTCCTTTTCTGATAGGTGTCCAAACTTCACTGACTAATAGTGTGTGTGTTTTTCTGAAAACACCTACGATTACCGATAAAGAAACAACTCAACAATACTCAAGGGTCAAGAGCTCAACTAAAGCAACCACCAACCTCCATGATGGTGACCTCAAACGAAACATTTTCAATAAGACACCAACATCTAAACCTCTGTTAATTCTCAATAAGATCTTCTGTAGTCGTGTGACAGAAATAAAGTCAGTCTGGTTAGTAATAAGTGAAGCTGGTGATGCTGTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU184321 True 465 TUCP 0.41 1 10133299 10133763
TU184320 True 130 TUCP 0.36 1 10221095 10221224

Neighbor

gene id symbol gene type direction distance location
CI01000030_10099125_10101681 NA coding upstream 31139 10098958 ~ 10102160 (+)
CI01000030_10039688_10047019 NA coding upstream 86089 10039358 ~ 10047210 (+)
CI01000030_09989586_10008913 NA coding upstream 124144 9989367 ~ 10009155 (+)
CI01000030_09922237_09930221 NA coding upstream 202931 9922049 ~ 9930368 (+)
CI01000030_09876738_09883981 NA coding upstream 249294 9875285 ~ 9884005 (+)
CI01000030_10246173_10256836 NA coding downstream 23186 10244410 ~ 10256912 (+)
CI01000030_10259762_10274068 NA coding downstream 38490 10259714 ~ 10274169 (+)
CI01000030_10304328_10313568 NA coding downstream 83104 10304328 ~ 10313627 (+)
CI01000030_10333687_10335629 NA coding downstream 112294 10333518 ~ 10335792 (+)
CI01000030_10422761_10426202 NA coding downstream 201428 10422652 ~ 10426252 (+)
G162334 NA non-coding upstream 1728 10115690 ~ 10131571 (+)
G162350 NA non-coding upstream 37704 10087916 ~ 10095595 (+)
G162583 NA non-coding upstream 51839 10017898 ~ 10081460 (+)
G162572 NA non-coding upstream 95006 9975317 ~ 10038293 (+)
G162574 NA non-coding upstream 114176 9982711 ~ 10019123 (+)
G162633 NA non-coding downstream 7420 10228644 ~ 10238283 (+)
G162632 NA non-coding downstream 15902 10237126 ~ 10237654 (+)
G162650 NA non-coding downstream 63439 10284663 ~ 10299194 (+)
G162355 NA non-coding downstream 76449 10297673 ~ 10490876 (+)
G162319 NA non-coding downstream 93915 10315139 ~ 10316965 (+)
G162449 NA other upstream 776285 9356403 ~ 9357014 (+)
G162137 NA other upstream 1561573 8568010 ~ 8571726 (+)
G161986 NA other upstream 1584974 8544582 ~ 8548325 (+)
G162088 NA other upstream 1893695 8237965 ~ 8239604 (+)
CI01000030_10473378_10509560 NA other downstream 270222 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 517357 10738087 ~ 10751548 (+)
G162821 NA other downstream 644788 10866012 ~ 10868440 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 1119531 11362114 ~ 11380772 (+)
G162951 NA other downstream 1271377 11492601 ~ 11496119 (+)

Expression


Co-expression Network