G162633


Basic Information

Item Value
gene id G162633
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10228644 ~ 10238283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184713
GTTCAAGACGAGCATTTATGATTAAAACGTAAATATACATATTTTTTTTAGAAAATGAGTGATGGTTTCTCTAGATAAGACCCTTATTCCTCATCTGGGATTGCTGTAAACTCGATTGAAGTCCACTATAAGGAGAAAAATCATGGAATGTTTTCATCAAAAACCTTAATTTCTTTTTGACTGAAGAAAGAAAGACATGAACATCTTCGATGACATGAGGAAGATCCCAAAGACTGCAGCAACAATCAACAGAGATCCAGCAGCAGCAGCAGCAGAGATCAACGCTAACAGAAAGACTGGACGATGAGAAGGAGAGTGTTTGTCCAGTGCTGTAATGACACTAATATCAAACTCTGCTGTACCTGCACATGTGTGACAGAGTTGAGTGATGTCCAGATGTTGAGTCTGGTTGCTGATGGGATTGTTCAGCACACAGCTGTAGGTGTTTTTATCCTGATAGTCCACCTCCAGAGGTAGAGAGAGACTGATGCTGAGATCAGACACACTGATGCTGGACAATAAACTGTTTCCTTTGTACCAGGAGAGAGTCACATGACCCACATTCACAGCTGAACACACCAATGAACAATTTGATGATGATGATGATGATGATGATGAAGAACATTGTGAAGAGTTACTGCTGATGACAGGAACAGGCAGACGAGCTGAAAAACATGGAAAAATAAACAGATATATGGATACATTTACACAACAGTTTTCAGTTCAGTGTGTTAAATGAGTGTTTGTACATTCTGTTACCTCAAAAAAAAAATGATGCAATGATTCAAAATGTTGATATAAAACAAGCTTACAGTATGTAAAGGACAGGACAAATGATCTCTACTCACTATAGACAGAAACACTGAATGTTTTATTTGTCAGTTTCACTCCTCTTATCTCTAGTTTATAAACTCCATCATGTTCAGGTGTGATGTTTGTGATGGTCAGAGATCCAGTTTGATTGTCCAGCTTCAGTCTGTCTCTGAATCTCCCACCAGTACCATTATATGTGTTGAAGATTTGGTTCTTTTCCTTCATTTTGGCTATGAGAGAGTTTTCAGCTCCATATTTCCACAGTATGTCATCTTCTTCATCTCTTTCAGTAAGATCAGTGTATAAAGTGACAGAATCTCCCTCCATCACTGACACTGAATCACCAAACACACCTGGAGAACATGAAGAGGTTTTGTTGGTTTATAAATCCTGAAATCAGCTGTAGTTTTTATTATTTTCATGTGAGCTGAAGAACATTCACAACAGCAGCAGAGACACAAAATGACAGGTGAGACTGATGAACAGACGTGTGTGTGTGTGTGTGTGT
>TU184711
GGCTTAATGTGCCAGGCCAAATCCGCACATCCAAAGCCTAGCTAAATCTGGCAACCATTACTGGGCCAGAGCTGTCAGAACACAGTGAGCCGACACCGACGCGCTAATACCTGGTAGTGTTGCAACATGTAGGGAGTCACCCGGCTCATCACTACAACTGCGTCTCCAGTAAAGCAGAACAACAACACTTTTATTTGGAGTGTTGAGTGTTGAAAATGAAGCTTCTCTTTAATTTGCTCGCGGTGATCTTGTTTTTACTCGACCAGGGTGTTACTGCTGCTGAGCTAGAACACATCGAGTGAGAAAAGGGAGAAACTGTCACTTTACATACTGGTGTAATAAGAAAACCAAGTGATGTGATCATCTGGTATTTTAATGACAATGTTGTTACTCCCACGAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184713 False 1321 lncRNA 0.39 2 10228644 10231531
TU184711 True 403 lncRNA 0.45 2 10236017 10238283

Neighbor

gene id symbol gene type direction distance location
CI01000030_10199403_10226165 NA coding upstream 1764 10199111 ~ 10226880 (+)
CI01000030_10178017_10185588 NA coding upstream 40525 10175476 ~ 10188119 (+)
CI01000030_10164557_10167430 NA coding upstream 59262 10164364 ~ 10169382 (+)
CI01000030_10148536_10153337 NA coding upstream 75205 10147217 ~ 10153439 (+)
CI01000030_10140982_10145096 NA coding upstream 83455 10139883 ~ 10145189 (+)
CI01000030_10246173_10256836 NA coding downstream 6127 10244410 ~ 10256912 (+)
CI01000030_10259762_10274068 NA coding downstream 21431 10259714 ~ 10274169 (+)
CI01000030_10304328_10313568 NA coding downstream 66045 10304328 ~ 10313627 (+)
CI01000030_10333687_10335629 NA coding downstream 95235 10333518 ~ 10335792 (+)
CI01000030_10422761_10426202 NA coding downstream 184369 10422652 ~ 10426252 (+)
G162634 NA non-coding upstream 33443 10194097 ~ 10195201 (+)
G162334 NA non-coding upstream 97073 10115690 ~ 10131571 (+)
G162350 NA non-coding upstream 133049 10087916 ~ 10095595 (+)
G162583 NA non-coding upstream 147184 10017898 ~ 10081460 (+)
G162574 NA non-coding upstream 209521 9982711 ~ 10019123 (+)
G162650 NA non-coding downstream 46380 10284663 ~ 10299194 (+)
G162355 NA non-coding downstream 59390 10297673 ~ 10490876 (+)
G162319 NA non-coding downstream 76856 10315139 ~ 10316965 (+)
G162408 NA non-coding downstream 105998 10344281 ~ 10354263 (+)
G162661 NA non-coding downstream 118820 10357103 ~ 10372898 (+)
G162297 NA other upstream 7420 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 182761 10039358 ~ 10047210 (+)
G162449 NA other upstream 871630 9356403 ~ 9357014 (+)
G162137 NA other upstream 1656918 8568010 ~ 8571726 (+)
G161986 NA other upstream 1680319 8544582 ~ 8548325 (+)
CI01000030_10473378_10509560 NA other downstream 253163 10471835 ~ 10511071 (+)
CI01000030_10738658_10751094 NA other downstream 500298 10738087 ~ 10751548 (+)
G162821 NA other downstream 627729 10866012 ~ 10868440 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 1102472 11362114 ~ 11380772 (+)
G162951 NA other downstream 1254318 11492601 ~ 11496119 (+)

Expression


Co-expression Network