G162366


Basic Information

Item Value
gene id G162366
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10513888 ~ 10515816 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184396
TGATTTTTGGCATAAAAGAAAAATCGATAATTTTGCAGATACAGCACATGAAAAAAATGGCTTTTTATACTTTTTAAACTATTTAACACTGGGTAATTCAAAGGGTACGTTTACACGACAGCGGTGTACTAAAAACAGAAAAGTTTTTCAGTTTTCTGATACAGACAACAACGTCGTCAAAACGATCCCCGTTCAGACGGATCCGCAAAAACAACTAAAAACGTTGTATTACTCCAGCCAGGCCAGTAGATGGCGATGTCACTTTAAAAAGAAACACTACGTCTATAGACTCAACACATAATACACATGTGCATGATGTCATTGTTTCCACAAATTCAAGTTTTTGTAGTTTACAAAGATACGATAACAGTATTTTTAAAAACTTGCACTGTAAAATCCCATTTTCAAAGGTTTGCGTTTTCAGGCCCCCATTGTCGTGTAAATGAACAGCCAAAACGCATAAAGCGTTTTCTGTTTTTAGTTGAAAACGGTGTCGTGTAAACGGCCCCTGAACCCCGGGTTAGCAGAATCCTGGTTATCTTGCTTCATGTTTCAAACTGCTCATAATTTATCTGGGGTTAACAGTTAATCTTGGGTATTCATAAACTGACGTTTCTTAAACCCCGGGTTAACATACTTATTTGCATGTTTGCAGTGTCAGCGTCACTGATTGGACAAACACCACATGCGTTTACATAAAGGCTCCAGCTCTGCACATCATATTATATATTGCCAACTGTACTATCAAGTTTATACCGAATTGACTTTTTATAATGATAATTCAAATTGTGTTTTCTTTCAACATTTGACTTTTTTCCCCTCAAACGCTGAAACTACTGTTTAACACACAGTGTTTCCATGACTGTCCAAAGCTTGTGAATATGAGGCTTGCAATTGGCTGTCAGTTGCTAAGCATTTGGCTGTAACATTCAAGCACTGTATAGTTTCACAATGTACATGTTTGGCAACGCAATGCTGGGTTAAAAGTGCCAAAGTGTCTCTAATCCTGCTCCGGAGCAAGATTTCATAACCCAGGTTAAAACACGGTGCTAACCCCGCTTCTAAATTACAAGTGTGACATTTCTTTACCAGGGGTTTAAAGCGGGACTTCAAACAAAGATAGCCCAGGGTGAAACGCAGTGTGAAAAAGTGTGAAAAACATGCATACCTCCATTAATGGTATCCATTATTACTGTTTGTTGTATTGTATTCACGTTTTATGATACATTTAAGGTAACTTCAATTATGCCATGTTTAGTGTCTATGGGTTCGTATCAAGAAGATTTAAATGCTTGTGTATACGATATGTTGATACCTGTGCAACACATCAGTATTACAAGAATCTTTAATAGTTTCTCTTCAGTAACTCAGCCATTTTAATCACGCTTGGTCGAAAAGCCCCCATAGAGGAATTTTGCCGCTCAGAGATCCTACCCATTTCATTGGTCAGGTCAACCCTTAGGGGTGTGACTTATCCCAGAGCTTAAAGCCAGCATGCAACGCTCCTCCCTCTCTCTTGCTTCTTTGGATGGACTGATGCCCTGCAGGGCGACCTCTTTAGGCCAAGGCCTAAGGGCCTAAACCTGCAACCCCAGCCATGTGCTCATCTAGAAGTGTGAAAGAACTCTTCCCTAATACAAGATTCAAACTAAACATGCAAGTTTGTTATTGCTTCTTTATTCAACGCAGAAGACATCGATTGCAACTTCAGTACCATCGGACCAAATTCTCAGGACTTCCTATGGCAACAATATTTTAAGACACTCTTCAAAAGGGCAGAGTCCTAATGCAAGTATCGTACGATATATTAAATTGCTGCTAGTTAGTTAAAATTGTGAACTCCCTTTGTTACAAGGGGAGCTTTTATGATGAATACTGATGATTCTTTTCCTGGTTTTTGGTTTCTTTGTAGCTATGTTTCCCACTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184396 True 1929 lncRNA 0.39 1 10513888 10515816

Neighbor

gene id symbol gene type direction distance location
CI01000030_10473378_10509560 NA coding upstream 2817 10471835 ~ 10511071 (+)
CI01000030_10422761_10426202 NA coding upstream 87636 10422652 ~ 10426252 (+)
CI01000030_10333687_10335629 NA coding upstream 178096 10333518 ~ 10335792 (+)
CI01000030_10304328_10313568 NA coding upstream 200261 10304328 ~ 10313627 (+)
CI01000030_10259762_10274068 NA coding upstream 239719 10259714 ~ 10274169 (+)
CI01000030_10537146_10539791 NA coding downstream 20375 10536191 ~ 10540258 (+)
CI01000030_10540503_10543066 NA coding downstream 24480 10540296 ~ 10543215 (+)
CI01000030_10567314_10570556 NA coding downstream 48578 10564394 ~ 10570573 (+)
CI01000030_10581114_10588932 NA coding downstream 64797 10580613 ~ 10589621 (+)
CI01000030_10596446_10602032 NA coding downstream 80401 10596217 ~ 10603637 (+)
G162355 NA non-coding upstream 23012 10297673 ~ 10490876 (+)
G162679 NA non-coding upstream 62805 10450489 ~ 10451083 (+)
G162401 NA non-coding upstream 84341 10422929 ~ 10429547 (+)
G162661 NA non-coding upstream 140990 10357103 ~ 10372898 (+)
G162694 NA non-coding downstream 6488 10522304 ~ 10564317 (+)
G162722 NA non-coding downstream 125989 10641805 ~ 10642033 (+)
G162365 NA non-coding downstream 134608 10650424 ~ 10650871 (+)
G162379 NA non-coding downstream 152583 10668399 ~ 10668676 (+)
G162297 NA other upstream 292664 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 468005 10039358 ~ 10047210 (+)
G162449 NA other upstream 1156874 9356403 ~ 9357014 (+)
G162137 NA other upstream 1942162 8568010 ~ 8571726 (+)
CI01000030_10738658_10751094 NA other downstream 222765 10738087 ~ 10751548 (+)
G162821 NA other downstream 350196 10866012 ~ 10868440 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 824939 11362114 ~ 11380772 (+)
G162951 NA other downstream 976785 11492601 ~ 11496119 (+)

Expression


Co-expression Network