Gene
RNA
| Item | Value |
|---|---|
| gene id | G162694 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 10522304 ~ 10564317 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU184784 | False | 351 | lncRNA | 0.33 | 2 | 10522304 | 10533874 |
| TU184785 | False | 334 | lncRNA | 0.34 | 3 | 10522304 | 10564317 |
| TU184786 | True | 425 | lncRNA | 0.35 | 3 | 10522589 | 10564317 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_10473378_10509560 | NA | coding | upstream | 11233 | 10471835 ~ 10511071 (+) |
| CI01000030_10422761_10426202 | NA | coding | upstream | 96052 | 10422652 ~ 10426252 (+) |
| CI01000030_10333687_10335629 | NA | coding | upstream | 186512 | 10333518 ~ 10335792 (+) |
| CI01000030_10304328_10313568 | NA | coding | upstream | 208677 | 10304328 ~ 10313627 (+) |
| CI01000030_10259762_10274068 | NA | coding | upstream | 248135 | 10259714 ~ 10274169 (+) |
| CI01000030_10567314_10570556 | NA | coding | downstream | 77 | 10564394 ~ 10570573 (+) |
| CI01000030_10581114_10588932 | NA | coding | downstream | 16296 | 10580613 ~ 10589621 (+) |
| CI01000030_10596446_10602032 | NA | coding | downstream | 31900 | 10596217 ~ 10603637 (+) |
| CI01000030_10605608_10626845 | CERS5 | coding | downstream | 39053 | 10603370 ~ 10627278 (+) |
| CI01000030_10628602_10631875 | BCDIN3D | coding | downstream | 64285 | 10628602 ~ 10632112 (+) |
| G162366 | NA | non-coding | upstream | 6488 | 10513888 ~ 10515816 (+) |
| G162679 | NA | non-coding | upstream | 71221 | 10450489 ~ 10451083 (+) |
| G162401 | NA | non-coding | upstream | 92757 | 10422929 ~ 10429547 (+) |
| G162661 | NA | non-coding | upstream | 149406 | 10357103 ~ 10372898 (+) |
| G162722 | NA | non-coding | downstream | 77488 | 10641805 ~ 10642033 (+) |
| G162365 | NA | non-coding | downstream | 86107 | 10650424 ~ 10650871 (+) |
| G162379 | NA | non-coding | downstream | 104082 | 10668399 ~ 10668676 (+) |
| G162356 | NA | non-coding | downstream | 104504 | 10668821 ~ 10669837 (+) |
| G162306 | NA | non-coding | downstream | 140604 | 10704921 ~ 10712174 (+) |
| G162297 | NA | other | upstream | 301080 | 10133299 ~ 10221224 (+) |
| CI01000030_10039688_10047019 | NA | other | upstream | 476421 | 10039358 ~ 10047210 (+) |
| G162449 | NA | other | upstream | 1165290 | 9356403 ~ 9357014 (+) |
| G162137 | NA | other | upstream | 1950578 | 8568010 ~ 8571726 (+) |
| CI01000030_10738658_10751094 | NA | other | downstream | 174264 | 10738087 ~ 10751548 (+) |
| G162821 | NA | other | downstream | 301695 | 10866012 ~ 10868440 (+) |
| CI01000030_11362386_11380216 | CALR3A, CALR3, CALR3B | other | downstream | 776438 | 11362114 ~ 11380772 (+) |
| G162951 | NA | other | downstream | 928284 | 11492601 ~ 11496119 (+) |
