Gene
RNA
| Item | Value |
|---|---|
| gene id | G162830 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 10896840 ~ 10898448 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU184938 | False | 1075 | lncRNA | 0.38 | 2 | 10896840 | 10898448 |
| TU184939 | True | 1075 | lncRNA | 0.38 | 2 | 10896840 | 10898448 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_10860938_10862107 | S1PR4 | coding | upstream | 34548 | 10860768 ~ 10862292 (+) |
| CI01000030_10775818_10796010 | NA | coding | upstream | 100187 | 10773601 ~ 10796653 (+) |
| CI01000030_10766284_10769462 | NA | coding | upstream | 127356 | 10766284 ~ 10769484 (+) |
| CI01000030_10753303_10762765 | NA | coding | upstream | 134075 | 10753303 ~ 10762765 (+) |
| CI01000030_10738658_10751094 | NA | coding | upstream | 145292 | 10738087 ~ 10751548 (+) |
| CI01000030_10911224_10918511 | NA | coding | downstream | 9918 | 10908366 ~ 10918929 (+) |
| CI01000030_10936461_10939911 | NA | coding | downstream | 38013 | 10936461 ~ 10940790 (+) |
| CI01000030_10958494_10960930 | TNFAIP8L1 | coding | downstream | 58709 | 10957157 ~ 10962204 (+) |
| CI01000030_10968005_10969830 | NA | coding | downstream | 68658 | 10967106 ~ 10970051 (+) |
| CI01000030_10993343_11015527 | ZFR2 | coding | downstream | 94895 | 10993343 ~ 11015855 (+) |
| G162827 | NA | non-coding | upstream | 14259 | 10882356 ~ 10882581 (+) |
| G162822 | NA | non-coding | upstream | 25660 | 10870534 ~ 10871180 (+) |
| G162819 | NA | non-coding | upstream | 39748 | 10856858 ~ 10857092 (+) |
| G162818 | NA | non-coding | upstream | 40372 | 10856049 ~ 10856468 (+) |
| G162817 | NA | non-coding | upstream | 41855 | 10854483 ~ 10854985 (+) |
| G162855 | NA | non-coding | downstream | 76313 | 10974761 ~ 10975108 (+) |
| G162859 | NA | non-coding | downstream | 83050 | 10981498 ~ 10982379 (+) |
| G162762 | NA | non-coding | downstream | 154825 | 11053273 ~ 11091871 (+) |
| G162875 | NA | non-coding | downstream | 204889 | 11103337 ~ 11103651 (+) |
| G162821 | NA | other | upstream | 28400 | 10866012 ~ 10868440 (+) |
| CI01000030_10473378_10509560 | NA | other | upstream | 395197 | 10471835 ~ 10511071 (+) |
| G162297 | NA | other | upstream | 675616 | 10133299 ~ 10221224 (+) |
| CI01000030_10039688_10047019 | NA | other | upstream | 850957 | 10039358 ~ 10047210 (+) |
| CI01000030_11362386_11380216 | CALR3A, CALR3, CALR3B | other | downstream | 442307 | 11362114 ~ 11380772 (+) |
| G162951 | NA | other | downstream | 594153 | 11492601 ~ 11496119 (+) |
