G162891


Basic Information

Item Value
gene id G162891
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 11225660 ~ 11252096 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU185006
TGTAGTTACATGTATAATCTTACAAACACGTACACATATATAATATTGTTTACATATACTTGGCAAACGATATGTTCAGATAACGTCTTCCTCTGGCATTCCAAAGAAATGTGTTGGTCTGAAAGAAGACGGTCACATACACCTAGAATGGCTTGAGGATGTGTAAAACATGGGGTAATTTAAATTTTTGGGTGAACCATTCCTTTAAATCATGTTCTATATTGCAGAAATCTCAGTCTTGAGTGCATATGAAATGTTTTACTGGAATTATGACCCAGATGGCTTAGCAACAGAGTTATAGACTCATTCAGTGGTCAGCTGGTTCAAACAAATGCAATACTACAGTAGGTCTACTGTACAACCCTGCCACTGGTTTTGTGCACCTACTGTACATTACTCATCCCGTCCTGATCGCACTGACCTTTCAATGTGCTAGTTTTCAAAGATCAATAATTTGGTCTGATGTGAATGAAATGCACAAGACTTACTTTTAAACATAATGACTCACCATGAACAGCAACAGTGAAGATCNNNTTTCTGCTGCTGCTGCTGCCGCTGATGATGTTTAGCTTATAAACTCCAGCATCTGTGTGAGTGGTGTTTGTGATGGTCAGAGATCCAGTCTGAGGATCCAGCTTCAGTCTGTCTCTGAATCTCTCTTTACACTGATCATCTGTACAGATCTTACTCTGATCTCCATTGATTTGTGCAATGCGAGTGCCATTAAAATACCATATAATCTTCTCTTGCTCTTTCGTTTCAACACCAGTGTTCAGAGTGACTGAATTTCCCTCCATCACTGACA
>TU185009
TGTAGTTACATGTATAATCTTACAAACACGTACACATATATAATATTGTTTACATATACTTGGCAAACGATATGTTCAGATAACGTCTTCCTCTGGCATTCCAAAGAAATGTGTTGGTCTGAAAGAAGACGGTCACATACACCTAGAATGGCTTGAGGATGTGTAAAACATGGGGTAATTTAAATTTTTGGGTGAACCATTCCTTTAAATCATGTTCTATATTGCAGAAATCTCAGTCTTGAGTGCATATGAAATGTTTTACTGGAATTATGACCCAGATGGCTTAGCAACAGAGTTATAGACTCATTCAGTGGTCAGCTGGTTCAAACAAATGCAATACTACAGTAGGTCTACTGTACAACCCTGCCACTGGTTTTGTGCACCTACTGTACATTACTCATCCCGTCCTGATCGCACTGACCTTTCAATGTGCTAGTTTTCAAAGATCAATAATTTGGTCTGATGTGAATGAAATGCACAAGACTTACTTTTAAACATAATGACTCACCATGAACAGCAACAGTGAAGATCTTATTTCTGCTGCTGCTGCTGCCGCTGATGATGTTTAGCTTATAAACTCCAGCATCTGTGTGAGTGGTGTTTGTGATGGTCAGAGATCCAGTCTGAGGATCCAGCTTCAGTCTGTCTCTGAATCTCTCTTTACACTGATCATCTGTACAGATCTTACTCTGATCTCCATTGATTTGTGCAATGCGAGTGCCATTAAAATACCATATAATCTTCTCTTGCTCTTTCGTTTCAACACCAGTGTTCAGAGTGACTGAATTTCCCTCCATCACTGACA
>TU185007
TTGAAGATCTTTCCACTGCCGCCGATGATCTGTAGTTTATATTCTCCAGAGTCTGTGTTTGTGGTGTTTGTGATGGTCAGAGATCCAGTCTGATTGTCCAGCTTCAGTCTGTCTCTGAATCTCTCAGTACCTTCATTACACTGAACATCTGTACAGATCTTACTCTGATCTCCATTGATTTGTGCAATGCGAGTGCCATTAAAATACCATATAATCTTCTCTTGCTCTTTCGTTTCAACACCAGTGTTCAGAGTGACTGAATTTCCCTCCATCACTGACA
>TU185010
GGTAATTTACATTTTTGGGTGAACCATTCCTTTAAATCATGTTCTATACTGCAGAAATCTCAGTCTTGAGTGCATATGAAATGTTTTTACTGGAATTACGACCCAGATGGCTTAGCAACAGAGTTATAGACTCATTCAGTGGTCAGCTGGTTCAAACAAATGGTCTACTGTACAACCCTGCCACTGGTTTTGTGCACCTACTGTACATTACTCATCCCGTCCTGATCGCACTGACCTTTCAATGTGCTAGTTTTCAAAGATCAATAATTTGGTCTGATGTGAATGAAATGCACAAGACTTACTTTTAAACATAATGACTCACCATGAACAGCAACAGTGAAGATCTTATTTCTGCTGCTGCTGCTGCCGCTGATGATGTTTAGCTTATAAACTCCAGCATCTGTGTGAGTGGTGTTTGTGATGGTCAGAGATCCAGTCTGAGGATCCAGCTTCAGTCTGTCTCTGAATCTCTCTTTACACTGATCATCTGTACAGATCTTACTCTGATCTCCATTGATTTGTGCAATGCGAGTGCCATTAAAATACCATATAATCTTCTCTTGCTCTTTCGTTTCAACACCAGTGTTCAGAGTGACTGAATTTCCCTCCATCACTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185006 False 805 lncRNA 0.39 4 11225660 11252096
TU185009 False 805 lncRNA 0.39 4 11225660 11252096
TU185007 False 280 lncRNA 0.42 2 11226300 11252096
TU185010 True 619 lncRNA 0.41 3 11241428 11252096

Neighbor

gene id symbol gene type direction distance location
CI01000030_11211094_11214554 NA coding upstream 10962 11209308 ~ 11214698 (+)
CI01000030_11184734_11195838 NA coding upstream 29795 11182706 ~ 11195865 (+)
CI01000030_11168935_11171909 NA coding upstream 53355 11168410 ~ 11172305 (+)
CI01000030_11114957_11124683 NA coding upstream 100556 11114868 ~ 11125104 (+)
CI01000030_11101642_11111505 NA coding upstream 112638 11100683 ~ 11113022 (+)
CI01000030_11278476_11281567 NA coding downstream 26300 11278396 ~ 11281743 (+)
CI01000030_11289568_11298414 NA coding downstream 35774 11287870 ~ 11298477 (+)
CI01000030_11316738_11317918 NA coding downstream 64399 11316495 ~ 11317959 (+)
CI01000030_11333340_11346098 NA coding downstream 81157 11333253 ~ 11346207 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B coding downstream 110018 11362114 ~ 11380772 (+)
G162875 NA non-coding upstream 122009 11103337 ~ 11103651 (+)
G162762 NA non-coding upstream 133789 11053273 ~ 11091871 (+)
G162859 NA non-coding upstream 243281 10981498 ~ 10982379 (+)
G162855 NA non-coding upstream 250552 10974761 ~ 10975108 (+)
CI01000030_10911224_10918511 NA non-coding upstream 315097 10908366 ~ 10918929 (+)
G162912 NA non-coding downstream 8052 11260148 ~ 11292095 (+)
G162763 NA non-coding downstream 13440 11265536 ~ 11267822 (+)
G162761 NA non-coding downstream 63506 11315602 ~ 11350125 (+)
G162954 NA non-coding downstream 139224 11391320 ~ 11391618 (+)
G162955 NA non-coding downstream 139543 11391639 ~ 11395583 (+)
G162821 NA other upstream 357220 10866012 ~ 10868440 (+)
CI01000030_10738658_10751094 NA other upstream 485109 10738087 ~ 10751548 (+)
CI01000030_10473378_10509560 NA other upstream 724017 10471835 ~ 10511071 (+)
G162297 NA other upstream 1004436 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 1179777 10039358 ~ 10047210 (+)
G162951 NA other downstream 240505 11492601 ~ 11496119 (+)

Expression


Co-expression Network