G162763


Basic Information

Item Value
gene id G162763
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 11265536 ~ 11267822 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184864
AAATGGAGCGAAACTGTCATCAAACACATTCAATGTTTCTGTGTATGCTCCTCTGCCCACTCCTAACATTATCAGAGATTGTTCTTCACCATCATCATCATCATCAAATTGTTCATTGGTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGCTGAACAATCCCATCAGCAACCAGACTCAACATCTGAACATCACTCAATACTGTTATGTTACATGTCCAGATAAAGGTCTGTCTTTACTGTACATAGTTCTGATCTCTGCTGGATCTCTGTTGATTGTTGCTGCAGTCGTGACGTGCTGCATCTGCAGGAAATGTAGAAAAAAAGTCCAGACATGGGAGGAAGACAGAACCGATTCAGCATTGTGTAAACCAACAACACGACAAAAGAAATCCAAGACGGAGTTAGTGTATGAAAATGTTCCCAAAAAAAGATGATCAAGTACTGGAATTAATTAGGGATCCTATGGGTCTCTGCCTCACACCTTTTGCTTTTATTCACATTTATTTTCTGTCAGAATGTCTATATTTGTTTTTAAGTTGTTATTGTTTAAAATGTTGTTGCTCTGTATTAGTTTAATTTAGTGGTGCACCATAGTATCCAGAAACGTAACTAAGCATTTTATGGAAATGGATCTAACTTTCATTATTAAAAACTGATCCCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU184864 True 782 lncRNA 0.39 5 11265536 11267822

Neighbor

gene id symbol gene type direction distance location
CI01000030_11211094_11214554 NA coding upstream 50838 11209308 ~ 11214698 (+)
CI01000030_11184734_11195838 NA coding upstream 69671 11182706 ~ 11195865 (+)
CI01000030_11168935_11171909 NA coding upstream 93231 11168410 ~ 11172305 (+)
CI01000030_11114957_11124683 NA coding upstream 140432 11114868 ~ 11125104 (+)
CI01000030_11101642_11111505 NA coding upstream 152514 11100683 ~ 11113022 (+)
CI01000030_11278476_11281567 NA coding downstream 10574 11278396 ~ 11281743 (+)
CI01000030_11289568_11298414 NA coding downstream 20048 11287870 ~ 11298477 (+)
CI01000030_11316738_11317918 NA coding downstream 48673 11316495 ~ 11317959 (+)
CI01000030_11333340_11346098 NA coding downstream 65431 11333253 ~ 11346207 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B coding downstream 94292 11362114 ~ 11380772 (+)
G162895 NA non-coding upstream 11807 11246668 ~ 11253729 (+)
G162891 NA non-coding upstream 13440 11225660 ~ 11252096 (+)
G162893 NA non-coding upstream 28617 11234723 ~ 11236919 (+)
G162892 NA non-coding upstream 30949 11215987 ~ 11234587 (+)
G162875 NA non-coding upstream 161885 11103337 ~ 11103651 (+)
G162761 NA non-coding downstream 47780 11315602 ~ 11350125 (+)
G162954 NA non-coding downstream 123498 11391320 ~ 11391618 (+)
G162955 NA non-coding downstream 123817 11391639 ~ 11395583 (+)
G162964 NA non-coding downstream 143560 11411382 ~ 11423557 (+)
G162974 NA non-coding downstream 165973 11433795 ~ 11434026 (+)
G162821 NA other upstream 397096 10866012 ~ 10868440 (+)
CI01000030_10738658_10751094 NA other upstream 524985 10738087 ~ 10751548 (+)
CI01000030_10473378_10509560 NA other upstream 763893 10471835 ~ 10511071 (+)
G162297 NA other upstream 1044312 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 1219653 10039358 ~ 10047210 (+)
G162951 NA other downstream 224779 11492601 ~ 11496119 (+)

Expression


Co-expression Network