G162951


Basic Information

Item Value
gene id G162951
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 11492601 ~ 11496119 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU185083
CCAATTTTATTTCAGACAAAAAGGAATTAGGAAAATATCCAATCTACTTACAAAACTCACTAAGTAATGCAGGCTCATCCATTTCCTGGCACATCAACACTCTTTGCGCATCGGTCCAAATGAGAGCTACAAATTCGAGACGACACATTAGCAAAAAGGGAACTCGAAATCTGAGTCGGGATATAAAAATAAAGCTTTCGCTCATTTCTAAACCTCTCTTAGCTCACGACTCAGAGAGCTTGGCAGATTAGCAAACAAACAACCAACGACATGAACACCTTTGAGATATGAGAACATATGGCTTATATATACATATAGTCAAAGAAGACAAAGGACAGGAAAGATTTAAACAGGAAAAATACAAGGATTTACACTCAGTTCTTAAAGGGTATTTTTGCTCCAAATCCAGAGCATCCTCAGAAATATAAAGTTTAGAACGGGTCTGTCGAAGGCAGCAGGTATACTGTACATCCTAGGGCTTTCCAACAACGCTGAAGATGCATTTTGCACAAAAATATCATGCTAAACAGACAAAAATCATATTTAAATGGACCATAATCAGGGAAGACGGCATATTTAATTTGACACAAACAAAAACGAGGCTGTGAAGGTGGAAATGGTCTATAAAACATGAGTAGAACGAAGTGTAAATTGTTTGCAAAACCATTTCTTACGTAATTGTTTGCATTAAAATGCAGTGCTTAATTTAGCCACAGATTTTGGTGTAAATTGTTTGTTAAACCATGGTTACATGAACGAATTGCATAAAAACTTAAGGCTCAATAGGTCTCAAGGTACTAAACCATGTCATTGTTTCATTTATTAACACAAATTTTTTTACACATTTTTTTAATTTTTTTTTTTTTTTAATTTTCGTCCACTGGAAAGTTTTTGTAAACGCATATTTCCAATGTTTCGTTGGCTGAATGATCGACATGGTGCATTAAACAAACAAACAAAAACACTGACTGATGTACATATATCCTTATTTTCAGCTGCGTTATTTTCGTCCACTGGAAAGTTTTTGTAAATGCATATTTCCAATGCTTCTTTCCAATGGCTGAACGATCGACATCATGGTGCATTAACTCTTTCCCCGCCATTGGCTTTCCGTGTTTTTACTGTTACTCGGTAAGGGCCGCTATTACACATCTCCTGAAAGAGTATAGAGTCAAAACGCATGCAAAAAAAGAAGCAGAAACAAGCGATAAAAGCATTGCTTATGCACGTTGTAGTCTTTGAAAAAACAGACAGTTTTCTTAGCTTTTTGTTCAAAATGTTGCTTTTTTATGAAACTTACCCACAGTGAAGTTTTGATAAAAAAAGAATGCATGAAGCTAGAAAAAAACTGAGTTTTTTGTTAAAAGCAAAGGCTCTGTTGTTTCTTTTGATATACTGCAAGTTCAGACATTCATAAAACAAAATATTCTATCTTGACGGAAACCCTGTGGACTAATGCATCATTTTGTTAATGTAATGTTTTAACATTTCTTCATCATACTTTGCAATTCAATGCAAACAGGTCTGATATGGGATGGGATTGGTTGTGATGTTATTTATGTTTTTTTTTTTTTTTTCCCCCTTTAATTTTGATTGTTTTCTTTGTATTTGTATAGGTAAAGAGACGTAATCTGTAAGATTGCAAATTCATTTGTAAAAGTTGTCTCCCAATTAAAAAAAAATATTCTGGGGCCATTAAAATTTTGTTCTTTTCAAAATATTGTTTTTATATGATGTCGGGGAAAGAAAAAAAACAGACATACATCTATACTTATTTTTACTTGCATTACATTAAATATGCCGTCTACTAAGGTCCACTGAGAAGTTTCAGCATCTTTTACAATTAAGATATATCTACATCAACAATGAAATATTTACAGTCGCCGACTTTGCGAAGGGTAGTAACCGTTCACAGTGAGTGTCGTGTTGGGCACCTTGAACCACTGTCTTCATGCTCCACGTGCATTTGTTGTAGACCTTGTAGACCGTCCTGAGGAAGTAGCTACAGCAGAAGAAATGGACGACCCTGTTAATTACGATGTGTTGGGAAAGTAGCGTACATTTACGCACTTGGTGTGCGTGACTTTCAAGGTGCGTTCCCTTTAGACCCTGATGTTGTTAGTGCCAGGGTTGGGCCACAGGTTGGGCTAAGGCTAAGGTTGAGGTGGCATTTTGTCTCTCGGTCGTGTGACTACACCAAGGCGTAGTCAAACTGGCCCCGCTCGAAGCCGTCCTTATGATCGGTCCAAGAGGAAGCAGGCATACGGCTGTAGGGATCCAGCAATATCCGGAAGCAACGCACCAACAGGAAAATCAAAAACAGCATCAGGAGACCAACGAATGCAAAGGCCGTCCTTTGCTCGGCGTCCCCGCCAAGAGGTGGGCTGCTGGGGACCCCGACGAACGAAGGCCCCGGCGAGAGCAGCTCATAGTCCAGCGTGGACACATCGCTCATCCTCCAGGGAGGGCGACGGCAGAACTTGCAAGCTGTCTGGAGGGTGGGTTGGATGGAGAGGTTGGCCAGATTGGTACAGTGACCGATGTGGACAATCAAGGCCAAAGTCAACCCTCTCGACACTTTTGCCTGCGTGACGGACACGCAAACTGACACAAGTGGAGCAATCAGGGACTTTGCAGCTCAAAACGACAGGCCTGGTTATTTCAGACCTGTCACATCTGATCTGACCCTCAAGTGGCACGGCGCAAGTCGATGGGACATGACACAACAGGCTGCCACAGTGGATAAAAACAGCAGCGCGTGCAGGGACTCGAGTCACACGCTCGTTTCCCGTTGCTCTTCGCTGCAGGGTTGGGGCTAATTGGTTCCAGATGGGACACGGTTTGCAGGTGTTGTCCCGACGTTGGGAGCCACTTTACGCTAAAGCAAAATCGCCCGGTGGCAAGTTTCCCATTTCTGGCTAGTGCTGAAAGTGGCAGACAGAAGAATTTCTGTCACTTAATTGGTTCAGCAGGGCACTAGATCAATACGTGAATATCTGCGAGCATTAAATGAGCCGTTTGCAGAGCAAGTTTGATTAGCGGGCTGCTGTCTGTTCAGTAGGTGCGCATTAGGTTGATGAGTCAGAGATGATCTGTTCCTTCTTGCTTGCCTCTGAATGCGTTTTTTCACACAGAAACGTCTTGTAAGGTTGGTACTATTGATCGAGTTGGGATCAGATGTAGGCGGACAGCACAGTCAAAGAAATGATGCCTTCGCTGCAGTGTTTTTGGCCTCTGGTCTGTTGTACTTCAGCCTGTAAACACACATATTCAACATTTAATTCATCACCAATAACTGTTCCTACCCAAAACCTCAAAATGAAGAAATATGATATGCTTTTCAAAAATGTATTCACTTTATAGAACTGTCTACTGAATCTTAACACAAAATATATAAAATAAATACATTTTGCATGTTTATTTTTTTACTTCCTCTGCTCTCCTTATATATGATCTCCTTCTATATGTTCCTTTCCTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU185083 True 3478 TUCP 0.41 2 11492601 11496119

Neighbor

gene id symbol gene type direction distance location
CI01000030_11464522_11490298 FBN2B coding upstream 1973 11464522 ~ 11490628 (+)
CI01000030_11437923_11444045 NA coding upstream 48552 11437627 ~ 11444049 (+)
CI01000030_11382916_11385905 NA coding upstream 106262 11382371 ~ 11386339 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B coding upstream 111829 11362114 ~ 11380772 (+)
CI01000030_11333340_11346098 NA coding upstream 146394 11333253 ~ 11346207 (+)
CI01000030_11550703_11555403 UHRF1 coding downstream 54584 11550703 ~ 11555596 (+)
CI01000030_11563241_11581907 KDM4B coding downstream 67122 11563241 ~ 11581907 (+)
G162975 NA non-coding upstream 58337 11434048 ~ 11434264 (+)
G162974 NA non-coding upstream 58575 11433795 ~ 11434026 (+)
G162964 NA non-coding upstream 69044 11411382 ~ 11423557 (+)
G162955 NA non-coding upstream 97018 11391639 ~ 11395583 (+)
G162954 NA non-coding upstream 100983 11391320 ~ 11391618 (+)
G162821 NA other upstream 624161 10866012 ~ 10868440 (+)
CI01000030_10738658_10751094 NA other upstream 752050 10738087 ~ 10751548 (+)
CI01000030_10473378_10509560 NA other upstream 990958 10471835 ~ 10511071 (+)
G162297 NA other upstream 1271377 10133299 ~ 10221224 (+)

Expression


Co-expression Network