CI01000033_00509701_00513969


Basic Information

Item Value
gene id CI01000033_00509701_00513969
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000033
NCBI id null
chromosome length 1934898
location 509393 ~ 514281 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000033_00509701_00513969.mRNA
ACAGCGAGTAGGAGGGCCTGTCCCTGCCCAGACGAGAGGTGTTTCATATTGCACATCACCCATGCTTTAGGGGAAAGTACACTACAGCACTCCTCTTGGACATCTGCTGAGAAACTCTAAACAGGAACACACTCACTTACACAAACACAAAGCCATCGTACAGGAAGCTTGACACACTCTGAGGTTTGTCTACGGGCCAACCAGAAGACGAGAGGTGGAGGCCACGCTCATTCGACATCATCGATCCCAACCTCACCAGTGTTTTCGCCTCAGTTCGCTCACTCTTCTCCTGCACTGAGGCTGTCGGGCACCATGTCTCTATCTGCCGAGTACTGCAGTGATAATACGGGTGACAGGGGTGGCGGTGGTGGAGCTCTGGCCCATCAGAGGAAGATGATACGGGGATTGCTGGTTTGGGCCACCCTGCTCACTCTAGGCTTGGCTGCATCAATAACTCTGCACTTCATTCAAAGAGAACCACCGGCTCCTAAAAAACTGCAGACCCAGCAGGATCAAAGAATCCCCACCCAACAGCCAAAAGTCATGGACTTGGATCTAATGACATTTTCACCAAGCTGGGAAGAAAAAGACATGGTGGATGTACTCCAGTGGAACACAGTGAGTCCTACTGGCTTCATCGAGGGAAAGGAAAAGTTGAGGGTGAAGGACGAAGGCCGATATTTCCTGTACCTGCAGGTTACCCTTATTCCTCAAAAAACAGAAAACTATACAATAATTGTGGATTCAAGCGAAAAAGGTCCCATTTTAAAAGGTCTCATCGATAAATCAAAACTCTCGACTGGTTTCATGGGTGTGGGGATTTCCATGAATAGTGGAGAAACCTTAACTGTGATCTGCAAACCTAAAGCCAAAATCTCGGACATTTACATTGACACCTACCTGGGTGTAATCAAGCTTAGTTAAATCTGAATGGATCTGAAATGGATCTGTGACAGTATGAATGTGGACTCACTCTGCAGAGTGCTGAAACGCACTGATCTGCTGGGTTTTGAAGTACACTGGAGGCAGTGTACGACATGTTTGATTTGGTAAGAAAAGTATAACTTTTTTTCTATTTATTTCTTAAAGTGACATCTCCAAAGCTCTCTGCATTTATTGCACTATATTTAAGCTTTTCTCCACTCGATGGACGATGTGGTACTGCATAGCTGAATTCTGATTGTTATTACCAATATAAAATTGGGACCCTATTGATGCACTTTGTAAATAAA

Function

NR:

description
hypothetical protein cypCar_00034534

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000033_00509701_00513969.mRNA True 1232 mRNA 0.45 3 509393 514281

Neighbor

gene id symbol gene type direction distance location
CI01000033_00482628_00490027 TMED1A coding downstream 19366 482265 ~ 490027 (-)
CI01000033_00415100_00423953 QTRT1.S, QTRT1 coding downstream 85440 414952 ~ 423953 (-)
CI01000033_00326195_00369841 NA coding downstream 139552 326137 ~ 369841 (-)
CI01000033_00313235_00315162 NA coding downstream 194205 313060 ~ 315188 (-)
CI01000033_00306473_00307958 NA coding downstream 201435 306333 ~ 307958 (-)
CI01000033_00662958_00699643 ADGRL1 coding upstream 148677 662958 ~ 699643 (-)
CI01000033_00774703_00795792 NA coding upstream 260227 774508 ~ 808351 (-)
CI01000033_01065312_01066129 NA coding upstream 549904 1064185 ~ 1066371 (-)
CI01000033_01086310_01093184 NDEL1B coding upstream 571518 1085799 ~ 1093184 (-)
CI01000033_01119076_01152170 ARHGAP44 coding upstream 604648 1118929 ~ 1152170 (-)
G168182 NA non-coding downstream 8642 499010 ~ 500751 (-)
G168178 NA non-coding downstream 30928 477110 ~ 478465 (-)
G168168 NA non-coding downstream 188903 320147 ~ 320490 (-)
G168167 NA non-coding downstream 196662 312418 ~ 312731 (-)
G168164 NA non-coding downstream 203977 305142 ~ 305416 (-)
G168206 NA non-coding upstream 3749 518030 ~ 518283 (-)
G168213 NA non-coding upstream 14384 528665 ~ 529528 (-)
G168230 NA non-coding upstream 48670 562951 ~ 563245 (-)
G168241 NA non-coding upstream 72294 586575 ~ 586842 (-)
G168245 NA non-coding upstream 90164 604445 ~ 604791 (-)
G168237 NA other upstream 243090 757371 ~ 771591 (-)
G168847 NA other upstream 711307 1225588 ~ 1229549 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026734 tnfsf18 coding NC_007114.7 CM002887.2 47281236 ~ 47294365 (-)