Gene
RNA
| Item | Value |
|---|---|
| gene id | G168245 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000033 |
| NCBI id | null |
| chromosome length | 1934898 |
| location | 604445 ~ 604791 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU191129 | True | 347 | lncRNA | 0.40 | 1 | 604445 | 604791 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000033_00509701_00513969 | NA | coding | downstream | 90164 | 509393 ~ 514281 (-) |
| CI01000033_00482628_00490027 | TMED1A | coding | downstream | 114418 | 482265 ~ 490027 (-) |
| CI01000033_00415100_00423953 | QTRT1.S, QTRT1 | coding | downstream | 180492 | 414952 ~ 423953 (-) |
| CI01000033_00326195_00369841 | NA | coding | downstream | 234604 | 326137 ~ 369841 (-) |
| CI01000033_00313235_00315162 | NA | coding | downstream | 289257 | 313060 ~ 315188 (-) |
| CI01000033_00662958_00699643 | ADGRL1 | coding | upstream | 58167 | 662958 ~ 699643 (-) |
| CI01000033_00774703_00795792 | NA | coding | upstream | 169717 | 774508 ~ 808351 (-) |
| CI01000033_01065312_01066129 | NA | coding | upstream | 459394 | 1064185 ~ 1066371 (-) |
| CI01000033_01086310_01093184 | NDEL1B | coding | upstream | 481008 | 1085799 ~ 1093184 (-) |
| CI01000033_01119076_01152170 | ARHGAP44 | coding | upstream | 514138 | 1118929 ~ 1152170 (-) |
| G168241 | NA | non-coding | downstream | 17603 | 586575 ~ 586842 (-) |
| G168230 | NA | non-coding | downstream | 41200 | 562951 ~ 563245 (-) |
| G168213 | NA | non-coding | downstream | 74917 | 528665 ~ 529528 (-) |
| G168206 | NA | non-coding | downstream | 86162 | 518030 ~ 518283 (-) |
| G168182 | NA | non-coding | downstream | 103694 | 499010 ~ 500751 (-) |
| G168271 | NA | non-coding | upstream | 219555 | 824346 ~ 824670 (-) |
| G168280 | NA | non-coding | upstream | 224985 | 829776 ~ 829993 (-) |
| G168283 | NA | non-coding | upstream | 228148 | 832939 ~ 833163 (-) |
| G168688 | NA | non-coding | upstream | 237547 | 842338 ~ 842603 (-) |
| G168237 | NA | other | upstream | 152580 | 757371 ~ 771591 (-) |
| G168847 | NA | other | upstream | 620797 | 1225588 ~ 1229549 (-) |
