CI01000034_00051315_00059354 (TOM1)


Basic Information

Item Value
gene id CI01000034_00051315_00059354
gene name TOM1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 50716 ~ 59354 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_00051315_00059354.mRNA
AACATGCCACATGTTCTTCTCTCCCGTCAGAAGACTGGGGCCTCAACATGGAGATCTGTGACATTGTCAATGAAACAGTTGAAGGACCTAAAGATGCAGTCAGGGCAATAAAGAAGAGGATTCTGGGAAATAAGAATTTCAAAGAGGTCATGCTGGCATTGAGTGTGTTGGAGGCCTGTGTGAAGAACTGCGGGCACAAATTCCACATCTACGTGTCCACAAGAGACTTTGTGGAGAATGTTTTAGTCCAAACGATCCTGCCTAAAAACAACGCACCGGTGGTTCTTCAGGACAGAGTCTTGAGCATGATACAGGCGTGGTCCGATGCCTTCCGTAGTTCTCCAGATTTGACAGGGGTTGTAACCGTGTATGAGGATCTCAGGAGAAAAGGCCTGGAGTTTCCCATGACTGAACTGAATGGTTATTCCCCTATTCACACTCCCAACAGGACCGTGGGATCCGTGTCTCCGGTAACAGCTGGTACAGAAAGTCACTCCGTCACATCCTCACAGCCACAGAATACAGAGACGCCCGTCACGCTGTCACCTCAACAGATGAAGACTTTGAAGGCCGAACTGGAGGTGGTGCGTAATAATATATCTGTGATGTCTGACATGATGAGTCAGATGGAGCCTGGAAGTCTTGAGCCGTCGGACACAGAGGTGCTACAGCAGCTGTACTCCATGAGCAAGGACATGCAGGGCCGGATGGTGGAGCTCATACCCCGACTGACAGAGGAGAAGCTCATAGAGCAGTTACTCACTGCCAATGATGACATTAACACCACATTTGCACAATATCACAGATTTGAAAGGCATCTCAACAGACAGAGCAGTACACAGTCTAATCCAGCTAATGCAAACCTCATTGACTTGGGTACTACCAACCAATCAAAGGCAGCAAATGGTGCTCACAGTGCAATCAGCCAATCAACAGTCACCACACTATCCAATCAGATGGCAGGATTGAGCACAAAAGGAGATGACCTAAAAGTAAATAAAAGCAGCTCATTACAAAAAAGGTAGGAATTAAAGCAGTTTATATGTATAATATAATTATCATTTTAGAAAACAGCATGAAAAACTAGAGCTGTAAGCAAATGTTTGTGATAATTTCAGGAAGTGAAGTCATGGGCAATGAAGTGAACTTGATTTGTTTAAATCTTTTTTTTTTAAGTGCCCCTATTATGCTCTATTTAAAGGTTTCTAATTTTGTTTTAGTGGTCTCGTACAACAGCTTTACATGCATCCAAGGTCAAAAACAGTTTAATTTTCTCATAATATACCTTACAGAATTACCTTTTTTCGATAAAGGATTCGGTCTCTCTAAACCCCTCCTTTCCGAGAGCCTACACTGCTCTCACTGGTCAGATGGCCTAGTCTGTTGTGATTGGTCTACTCTGCTCTGATTGGTCAGATGACCCAGTCTGTTGTGATTGTTCTATCACTTACAGCGCATGTCAGAAACCGAACGAGAAGGTGCTCACTGCAAATGGGTGGAGCTTACGTTAGCTCCCCCTCCCTAGATATCCAGTGAGGAGGAGCGCATGTACAATATTATTAGGCCTTAGGCTCTGTGAAACACAAGTTGTATATCTTGTCTGACAAATGTTATTAAAAATAAA

Function

symbol description
tom1 Predicted to enable clathrin binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in endosome and membrane. Orthologous to human TOM1 (target of myb1 membrane trafficking protein).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_00051315_00059354.mRNA True 1624 mRNA 0.44 10 50716 59354

Neighbor

gene id symbol gene type direction distance location
CI01000034_00071780_00082031 NA coding upstream 12190 71544 ~ 82031 (-)
CI01000034_00097095_00098729 MFSD6L coding upstream 37672 97026 ~ 99123 (-)
CI01000034_00101894_00115404 NA coding upstream 41698 101052 ~ 115404 (-)
CI01000034_00361018_00362033 MCHR1B coding upstream 301560 360914 ~ 362033 (-)
CI01000034_00368808_00390623 NA coding upstream 309132 368486 ~ 391307 (-)
G171136 NA non-coding downstream 6617 43738 ~ 44099 (-)
G171131 NA non-coding downstream 7468 23190 ~ 43248 (-)
G171146 NA non-coding downstream 37831 11750 ~ 12885 (-)
G171164 NA non-coding upstream 14897 74251 ~ 367683 (-)
G171177 NA non-coding upstream 110298 169652 ~ 187879 (-)
G171206 NA non-coding upstream 123670 183024 ~ 183365 (-)
G171272 NA non-coding upstream 231224 290578 ~ 335778 (-)
G171324 NA non-coding upstream 287495 346849 ~ 351155 (-)
G171229 NA other upstream 170050 229404 ~ 267246 (-)
CI01000034_00571856_00577732 NA other upstream 517134 571856 ~ 577775 (-)
CI01000034_01062505_01083413 NA other upstream 1012259 1062444 ~ 1083413 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 1252175 1311529 ~ 1312780 (-)
G171755 NA other upstream 1804764 1864118 ~ 1866373 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location