CI01000034_00627328_00635193


Basic Information

Item Value
gene id CI01000034_00627328_00635193
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 627019 ~ 635193 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_00627328_00635193.mRNA
AGATGTAGAAATGAATGGAGGAGAAACTCACCTCATACAACACTTGATTTTCCCAAAATCCTTGCGAGTTATATAATCACAGATTCACAGAATGATCAGAGAATGAATCACTTTCACCTGTTCGCGTTTTTAATTTGGCTGTTAATTGGGGACAGCCAAGCAATAATCAGAATTCCTCTGCACAAGACGCGCACTGTGCGCCGCATGTTGGCAGACAATGGGAGGACTATTGATGAGATCAAATCCATGGCCAGAGAGAAAAACTCCAAAGTCAAATTTACAGCCCCTTCCACAACAGAACCACCAACACAACTTCCACCACCTGTAGAGAAACTCACCAATTTCATGGATGCCCAGTATTTTGGAGTGATCAGTATTGGTACCCCTCCTCAGGACTTCACTGTGCTGTTTGACACTGGATCATCCAACCTCTGGGTTCCCTCTATCCATTGCTCCTACCTGGACATAGCGTGCTGGTTGCACCATCGCTACAACTCTAAGAAGTCAAGCACGTACGTTAAGAATGGCACGGCGTTCTCGATCCAGTACGGCAGAGGGAGTCTCTCTGGCTTCATCAGTCAGGATACAGTCACTTTGGCAGGGCTGAAGGTGCCAAACCAGCAGTTTGCAGAGGCGGTTAAACAGCCTGGGATTGTGTTCGCGGTGGCACGTTTTGATGGCGTCTTGGGAATGGCATACCCCGCCATTTCTGTAGATGGGATTACGCCAGTGTTTGACACGGCCATGGCTGCCAAAATCCTGCCCCAGAATATCTTCTCTTTCTATATTAACCGGGACCCTGCCGGTGAGGTTGGAGGTGAGCTGATGCTGGGAGGTTTTGACAAGCAGTATTTCGATGGTGATCTGCATTACGTTAATGTCACGCGAAAAGCCTACTGGCAGATAAAGATGGATGAGGTTCAGGTGGGTGGCACTCTTACCCTCTGCAAAAGTGGATGCCAGGCAATTGTTGACACAGGAACGTCAATGATTGTAGGGCCGGTTCAAGAGGTGCGGGCCCTGCAGAAAGCTATCGGAGCCATACCACTGCTTATGGGAGAGTACTGGATTGACTGTAAAAAGATTCCATCACTTCCTGTTGTTTCCTTGAGCATGGGAGGGAAGATGTTCAACTTAACTGGAAAGGACTATGTTCTGCAGGTGACTCATTTGGGTATGAGTGTTTGTCTGTCTGGCTTTATGGCCATGGATATCCCACCTCCCGCCGGGCCGCTGTGGATTCTGGGAGACATGTTTATCGGCCGCTACTACACTGTGTTTGACAGGGAGGCGGACCGCGTGGGCTTTGCTCCTGCCAAGTGAACAGAGAGTGAATGATATTATGGCATTGTACTGGATCTAATGGACCACTATCTATACTGAAACTACTGTTTTGTTTGAAGTTATTAAATTCATTGCTATTTGAAATATGCAACATCGACATGAGGACATTAACAAATGCTTGAAGTGATAGGATACTTTTTCAAGATTGAAACTTTAGTTAGGGTCTCTCCACTTCCCCTTGAAGCCTTATTGTGTTTTTATTTTGCACTAAATTTCAATAGATGAAGACAAACTATGCAGTTTTATTTTTATACTTTAGCTATTAATAATTTGAGTAAATTTAATAAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01379 CTSD; cathepsin D

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_00627328_00635193.mRNA True 1632 mRNA 0.45 10 627019 635193

Neighbor

gene id symbol gene type direction distance location
CI01000034_00604811_00614185 MPST coding downstream 12345 604766 ~ 614674 (-)
CI01000034_00599073_00603301 UBE2I, GM14176, UBE2IA, GM5931, UBE2IB coding downstream 23718 599073 ~ 603301 (-)
CI01000034_00571856_00577732 NA coding downstream 49287 571856 ~ 577775 (-)
CI01000034_00558341_00561924 C1QTNF6A, C1QTNF6 coding downstream 65024 558243 ~ 561995 (-)
CI01000034_00368808_00390623 NA coding downstream 235712 368486 ~ 391307 (-)
CI01000034_00648618_00659733 ST13 coding upstream 12693 647886 ~ 659733 (-)
CI01000034_00728121_00732221 NA coding upstream 92245 727438 ~ 732221 (-)
CI01000034_00881526_00896469 MKL1 coding upstream 246009 881202 ~ 896469 (-)
CI01000034_00934363_00941644 SLC25A17 coding upstream 297600 932793 ~ 941644 (-)
CI01000034_00956861_00961594 NA coding upstream 321351 956544 ~ 961594 (-)
G171382 NA non-coding downstream 73340 553304 ~ 553679 (-)
G171356 NA non-coding downstream 158311 465412 ~ 468708 (-)
G171309 NA non-coding downstream 184763 441287 ~ 442256 (-)
G171341 NA non-coding downstream 213982 412672 ~ 413037 (-)
G171340 NA non-coding downstream 214592 412193 ~ 412427 (-)
G171451 NA non-coding upstream 107873 743066 ~ 743771 (-)
G171530 NA non-coding upstream 328804 963997 ~ 964217 (-)
G171531 NA non-coding upstream 330646 965839 ~ 966103 (-)
G171404 NA non-coding upstream 443169 1078362 ~ 1080996 (-)
G171549 NA non-coding upstream 487224 1122417 ~ 1122719 (-)
G171229 NA other downstream 359773 229404 ~ 267246 (-)
CI01000034_01062505_01083413 NA other upstream 436420 1062444 ~ 1083413 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 676336 1311529 ~ 1312780 (-)
G171755 NA other upstream 1228925 1864118 ~ 1866373 (-)
G171835 NA other upstream 1806628 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 1874620 2510061 ~ 2511521 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location