XLOC_000009 (f10)


Basic Information

Item Value
gene id XLOC_000009
gene name f10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 135903 ~ 142469 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000024
AGTATAGATAAGCTCAGACGTGTTCATATTCTCCAGTTTCATGATTGCGAGCGCTGCTGTTTCTCCATTTCTCCTCCCCCTGTTCCTCTGTTTCTCTTTCTCCCTCCCAGCTCTCAGTTCATTGACCTTCTCTCTGTTTTCTGAACGATCTTTTAAAGTGAAAGAGTGGACGCCGACACCGACCATGTCTTGGGTTTTCTGGAACTTTATATCTTTGTTTGTCACCCACAGTGTGTGTGCAGAAGTCTTCCTCAACACTCGAGATGCTAATCAGGTTCTGATTCGTCAGCGGCGCGCAAACTCCTTGTTCGAGGAGATGAAGAAGGGGAACATGGAGCGCGAGTGCATTGAGGAGCGCTGCAATTATGAGGAGGCCAGAGAAATCTTCGAAGATGTTAAAAAGACGGATGAGTTCTGGCACAAGTATGTTGATGGAGATGCGTGTCTGTCTCACCCGTGTGTCAACGGTGGCCAGTGTAAAGATGCGATCGGGCCGTACACGTGTTTCTGTCAGCAAGGGTTCAAGGGCTACAACTGCGAGATCGTGATTCCTGAACTCTGCGAGAATGAAAACGGAGGCTGTGATCATTTCTGTGAGGTGATGGAGAAGAATGTGGTCTGCTCGTGTGCTAATGGATATGAACTGGCCCCCAACGGGAAATCCTGCCAGTCTCAGGATCCATTCAAATGTGGCGTCATTTATCCAAAGAAGACCAGAAGCATCTTCTTCCACACGCCGAACATCACCGAAAGCGAGAACGAAGAAGAGACGGAGCTGGAGGCCACCATAGAGCCGGTCTACAACCACTCGAACCCACTGAACAACCAGACCGACAGCATGTTCGGGCTCCACGAGCTGGAGATTATCGAGGAGGAACCAATCCTACCGGTGGTGTCCACAGCCGGAGACGGGAGGATCGTGAACGGTGTGGAGTGTCCACCTGGAGACTGTCCATGGCAGGCTCTCCTCATCAATGAAAATAACATGGGCTTCTGTGGCGGCACCATCCTGACCGAACACTTCATCCTGTCGGCCGCGCACTGCATGAACGAGTCGCTCTCCATCAGGGTGGTTGTAGgtGAGTACGACACGCTGGTCCCTGAGGGTCGCGAGGCCACGCATGATGTAGATGAGATTCTGATCCACAAGAACTACCAGCCTGACACCTACCACAACGACATCGCCCTCATCAAGCTCTCGAAACCCATCAAATTCACCAAATACATCATCCCCGCGTGTCTGCCGGAGATGAAGTTCGCTGAGCGTGTGCTGATGCAGCAGGATGACGGTCTGGTGAGCGGGTTCGGCCGCGTGCGTGAGGGAGGCCTGTCGTCCACCATCCTGCAGAAACTAACCGTGCCGTACGTCAACCGCGCTAAATGCATCGAGTCCAGCAATTTCAAGATCTCCGGCCGCATGTTCTGCGCCGGATACGACCAGGAGGAGAAAGATGCATGTCAGGGGGACAGCGGCGGGCCGCACGTCACGCGCTTCAAAAACACCTGGTTTATCACAGGTGTGGTGAGCTGGGGCGAAGGGTGCGCGCGCAAGGGGAAATACGGCGTCTACACACAGGTCTCCAAATACATCATGTGGATCAATAACGCAATGACGAAAGTCATGCCAGAGACCGGAGCGTCTTTAAAACCCAAAGCAAAGCGAGAGCTGCGGCACAAGACACCAATAAGAAGAGTCTGACTCCTCTGAGGAAAGCCTCATCTTTCATATGCATTTAATTACTCAGTCCACTAACAGCACAGGGctcaaactcaactcctggagggccgctgctctgcacagttttgctccaaccctactCAGACACACCTGATCCAGGTAATCAAGGTGTTCAGACTACTCTgagtggatcagctgtgtttgagtagggttggagcaaagctgtgcagagctgcagccctccaggagttgagtttgagCCCTGTGCTttaagggagagttcacccaaaagttacTCGTCCTTTACCAGCTTCTAGTTTTCTGttataaaacaaaagaagaagttctgaagaatgttgaacacCTTTATCTATTGGTTTTTATTCTTACTATGGAGGTCAGTGGTGTAACTTAAAagtatgaatattaataattaatgataacaaGTTGCaatttaattatgaatattttaattttaatcggATTTCATTACAATGGCTACAGGCTTTTGGCTTTCTttagaatattttcttttgtgtttaaaagaagaaagaaactcttaaatgtTTGGCAGTAAATAGTGGGTAAAtgtagatttttgggtgaactgtggcTTTAGTGTAATCCTCATGTGTATTAATATCATGGTATTTCTAGTAAAATCACATTATGGAGGTAGAATGGTTCATCAATGCTTCGACCATCATCCAGATGAGATGTCTGAGTTTTAATAAAGATGATAAACTGATTCTATGAGCTGTTTCACTCATGTTTTTAGTCAAATACAGATTATAGATGAAGTCGAAGGCAACATTATTTACTCTCCAGTGAAATTTTctttaatactttttcttctgcagaaagtttattttagtttggctgttGTTCATTTTTTAAGATCAATTTTTAAGATATTTAACATTAAGATAATTTTTTTAGTCCACAATCTACAAATttatctacagagcaaaccactgttgtcaaattaacttagttaagccttaaTTGAATactactttaagctgaatactagtatcttgaaaaatagc

Function

symbol description
f10 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Acts upstream of or within hemostasis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including epidermis; liver; otic vesicle; pharyngeal arch; and yolk syncytial layer. Human ortholog(s) of this gene implicated in breast cancer and factor X deficiency. Orthologous to human F10 (coagulation factor X).

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko01002 Peptidases and inhibitors
ko00536 Glycosaminoglycan binding proteins

ZFIN:

id description
ZDB-GENE-021206-9 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Acts upstream of or within hemostasis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including epidermis; liver; otic vesicle; pharyngeal arch; and yolk syncytial layer. Human ortholog(s) of this gene implicated in breast cancer and factor X deficiency. Orthologous to human F10 (coagulation factor X).

Ensembl:

ensembl_id ENSDARG00000088581

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000024 True 2727 mRNA 0.46 8 135903 142469

Neighbor

gene id symbol gene type direction distance location
XLOC_000008 f7i coding upstream 1824 127250 ~ 134079 (+)
XLOC_000007 f7 coding upstream 10657 119960 ~ 125246 (+)
XLOC_000006 f7l coding upstream 16757 109798 ~ 119146 (+)
XLOC_000005 hikeshi coding upstream 96712 36552 ~ 39191 (+)
XLOC_000004 eed coding upstream 101573 27690 ~ 34330 (+)
XLOC_000010 prozb coding downstream 1815 144284 ~ 151998 (+)
XLOC_000011 NA coding downstream 14323 156792 ~ 157282 (+)
XLOC_000012 cul4a coding downstream 15324 157793 ~ 167398 (+)
XLOC_000013 lamp1a coding downstream 34114 176583 ~ 182258 (+)
XLOC_000014 tmco3 coding downstream 76055 218524 ~ 225137 (+)
XLOC_000018 NA non-coding downstream 213012 355481 ~ 358562 (+)
XLOC_000024 dre-mir-155 non-coding downstream 433975 576444 ~ 576521 (+)
XLOC_000026 NA non-coding downstream 652507 794976 ~ 911551 (+)
XLOC_000028 NA non-coding downstream 873343 1015812 ~ 1033638 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_06281861_06289368 NA coding CI01000299 null 6279383 ~ 6290025 (-)