XLOC_000090 (CR855320.2)


Basic Information

Item Value
gene id XLOC_000090
gene name CR855320.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7988052 ~ 7989314 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000177
GTCAGGAGATCTGTCAGTATTGAGAGAAAAACCCTGCTCCCTATCAGTACTAATTGATATCAGCTgctttagtcctaattgatggCCTATAAAGGCTTCTCATTACTCAGGAGGCACACAGGAAAGACTTCATGATGGGTAAAAACAAAGAACTCTCTCAAGATCTGCGTAGTCTTATCGTTGAAAAGCATTTTGATGGGAATGGTTATAGGCGCATTTCCAGAATGCTGAATGTTCCTGTGAGCACTGTGGGGCCTATTATCCGGAAATGGAAAAAGCATAAGTTCACCATAAACCGGCCACGATCAGGTGCTCCACGTAAGATCCCTGTCCAAGGAGTCCAAAGAATAATCAGGAGAGTTCTCCAAGAGCCAAGAACCACTCGGGCAGAACTTCAGGAAGACCTCGCATCAGCGGGTACTATTGTTTCAAAGAAAACTATAAGCAATGCACTGAACCACCATGGCATCCATGCACGCTCACCACGCAAGACTCCATTGCTGAACAAAAAGCATGTTGAGGCCCGGTTAAAGTTTGCGAAACAGCATTTGGAGAAGCCTGTGGATTATTGGGAAACTATAGTATGGTCAGATGAAAGCAAAATTGAACTTTTTGGCAGTCATTCTACACATCATGTTTGGAGAAGAAATGGCACTGCCCACCACCCCAAGAACACTATACCAACAGTTAAGTTTGGGGGTGGAAGCATCATGGTTTGGGGCTGCTTTTCAGCAAGGGGTACTGGCAGACTTCATATTATTGAAGGTAGGATGAATGGAGAAATGTACCGGGACATTCTGGATAAAAATCTGCTGCCATCTACCAgaaagctgaaaatgaaaagagggtggacatttcagcaagacaatgatcccaaacacaagGCCAAGGAAACAATGAAGtggtttcaaagaaagaaaatcaagttgcttgaatggcccagtcaatcacctgacctaaatCCCATAGAAAATCTATGGAGAGAACTGAAGATCAAAGTTCATAAAAGAGGCCCAAGGAACCTTCAAGATTTAAAGACCGTTTGTGTGGAAGAATGGGCCAGAATCACTCCTGAGCAATGCAGACGACTGGTCTCTCCATACAAGAGGCGTCTAGAAGCTGTGATCACCAACAAAGGCTTTTCTACAAAGTATTAAGTAaagtgtgttcaatacttattccctgtgtcatttcactttatttattatgactcaacttgtatacttaaatgttctgatttctttgtatgaattcaatatttgg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103767

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000177 True 1263 mRNA 0.42 1 7988052 7989314

Neighbor

gene id symbol gene type direction distance location
XLOC_000089 CR855320.1 coding upstream 26356 7956030 ~ 7961696 (+)
XLOC_000088 en1b coding upstream 304680 7679328 ~ 7683372 (+)
XLOC_000087 NA coding upstream 313823 7672121 ~ 7674229 (+)
XLOC_000086 pcnp coding upstream 426830 7556965 ~ 7561222 (+)
XLOC_000085 lancl1 coding upstream 433589 7517449 ~ 7554463 (+)
XLOC_000091 SLC5A10 coding downstream 121248 8110562 ~ 8163167 (+)
XLOC_000092 cacna1hb coding downstream 315590 8304904 ~ 8404005 (+)
XLOC_000093 myo15ab coding downstream 452757 8442071 ~ 8507230 (+)
XLOC_000094 alkbh5 coding downstream 519439 8508753 ~ 8516595 (+)
XLOC_000095 mief2 coding downstream 532009 8521323 ~ 8532009 (+)
XLOC_000084 NA non-coding upstream 475290 7512529 ~ 7512762 (+)
XLOC_000082 CABZ01075319.1 non-coding upstream 872138 7092273 ~ 7115914 (+)
XLOC_000081 CU929161.1 non-coding upstream 924109 7063837 ~ 7063943 (+)
XLOC_000080 NA non-coding upstream 998025 6956913 ~ 6990027 (+)
XLOC_000097 NA non-coding downstream 584463 8573777 ~ 8575057 (+)
XLOC_000098 AL928650.2 non-coding downstream 585993 8575307 ~ 8577274 (+)
XLOC_000100 NA non-coding downstream 597916 8587230 ~ 8590636 (+)
XLOC_000105 NA non-coding downstream 961560 8950874 ~ 8965939 (+)
XLOC_000106 NA non-coding downstream 978165 8967479 ~ 8976422 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G520098 NA non-coding CI01000364 null 138455 ~ 221553 (-)
striped catfish (Pangasianodon hypophthalmus) G413192 NA non-coding NW_022995288.1 VFJC01000056.1 23875 ~ 30024 (+)
tiger barb (Puntius tetrazona) G176084 NA non-coding NW_025047824.1 JAEQBD010000169.1 1591265 ~ 1591971 (-)
mexican tetra (Astyanax mexicanus) G268650 NA non-coding NW_019172027.1 APWO02001625.1 181826 ~ 182688 (+)