CI01000034_00728121_00732221


Basic Information

Item Value
gene id CI01000034_00728121_00732221
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 727438 ~ 732221 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_00728121_00732221.mRNA
AGGAAAAACAGGAGAGATCAGAAACTATATTTGCTGCACTGGATGATCTCATTAACATGGAGCTGTCATCAATAGGAGAGCAAGTGTTTGCTGTGGAGGCAATAACGAAGAAGAGGTTTGTGGATTTTTATAACGTCTCGCTCTTGAATTGCGAGCGCTATAGATGGAGGGGGGTGTGTGAGAACAGCGCGCGTGTCATCATCTTCGCCATCAATGCGCGTTTCGCTCAGAAAATCGCCGCGTTTCGGAGCTACGCAGTTTATTTATACGGGTGCAGGGGAAATGTGGAATATCTGCTAAAGTGGCAAGGATGGTCGCCTAAGTACAGCACCTGGGAACCAGAGGACAACATATTGGACCCTCGTCTTGTCCTCGCCTACGAAGAAAAAGAGGAGAAGGACAGAGCTCTGGCTTATAAGAGGAAAGGCCTGAGACCACGTCGAGTTATCCTGAGGAACATCTACCCTATGGACCTACGAAGTGCACACAAGGTTCCAGATAAACCAACCCCGAGAATCCGCCTGTCGCTGACCCGTTCCGTGGGGACAGAAATAGACCAGAATGGGCGGCGCTGTAGAGAAGGCGTTGGTTATCGTCGTATAGAAAAGCGCAAGAACAGGCAGTGCAGGTCTAAGCTCATAGAAGACATCAAACTATCCCATCAACTAAACAGACATCCACTTCCATCAAAAGACTCTTCGGAGAAAGAGTGGAATGGAGACGAGGAAGATGAGCAGAAGAAAAAGGTCAAGAAGATGAGAAAAAATGAAGAAAACACAACAGAAGTGCACCAGGACATTCCAAGTGGTAAAGAGATGTCTGAGGGGTACAACTCTTCGACAGAACAGGAATCTGAAATTCCCATCAAAGAAACTGAGAACTGCTCTTCCATTTTTGACCATGCTGAGAAGCCAAGCGAGGATACCTGTCCAGTTTTAGAAGCAACAGAAAACAGTACAATCTCCGACGCACAAAAGAACGAGCCAGTCACAGACACTGCAGGGGGTGAGGACTCTGTACGGGTATCACATGACACAACAAACACTGACCAATCACTACACAACAGTTCCAAGTCAGGAGTCGAGAAAGGTGTGTTTGACAAAGTACAGAACAGACCTTCGGTTATCGAGGTACATTTGAGCGCTAGATATGGACAGGAAGAGGTAAGAGAAACATGTGAGGTAGACAGTTCAGGGGCCAAAGAAATGGAAATGATGGATACTGATGTCACAGCAGAATGCACAACAACATTACATATCCCAGTTGACCAATCGCAGACTTCTTCCACCACCACAGTGCATCCTGAGAAAGTCATTGTGACTCAGGTGACAATAAATTCCTTGACCGTGACATTTAAAGAGGCCATGACTGCAGAAGGCTTTTTCAGCAGCTATGGGCTTGAGGTCTAAACTGACAAAGGAACACAAGAACAACATTACAATAGATTAATGTACATTTAGTCAGGACCAAGTGAATAACACAGTTCGCAGTAGTGATATTGTCTAAGCAAGGTAAGGACACCTACAAGGCATTGTTTTCTTAAGTTTGTCCTTGTGTCATTGTGGTAAAATAATCGTTGAAGGACAACATTTCTGATTATACTCAGTGATGCTGTATGCGAAGACTTTAAGCATGTAAAGCGAATCTTTATATCTGTACCACTACTTTTCCATCAGCAGCAGTCATTGCACTACAGTGAGAAGAAACCGTTTTTAAGTTCCGAATCGAAGACAAAACTACTGTTACATTGCCTCTTTTGTCCTGTAACCAACCAGGTGGGAAAAGGAAAGGCCACCCTCCTTTGTTTCCATATCTGCGCCTGAGCTCTCTTCACTCTGTTCGGAGGCCTTTGTGCATTTTTAAAGAGACAGTATTGGTTTACATTCACAACTGCTACAGTGGAAGCTTTTGTAGGGGTAGATCCTGTTCATTTGAACACGTGTTTTAGGTGTGCTTTTAGCATGGCAGAAATCAAAGCTGAGCCTAAATTACATGTTTCGGTCGTGATAGTTGAACATGGCTTGTCAGCTCTGTTGTTGCTCTCACGTGTGACAACTACACTGTTTTTTTGCTTGTATTTACAGCAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_00728121_00732221.mRNA True 2092 mRNA 0.44 7 727438 732221

Neighbor

gene id symbol gene type direction distance location
CI01000034_00648618_00659733 ST13 coding downstream 67705 647886 ~ 659733 (-)
CI01000034_00627328_00635193 NA coding downstream 92245 627019 ~ 635193 (-)
CI01000034_00604811_00614185 MPST coding downstream 112764 604766 ~ 614674 (-)
CI01000034_00599073_00603301 UBE2I, GM14176, UBE2IA, GM5931, UBE2IB coding downstream 124137 599073 ~ 603301 (-)
CI01000034_00571856_00577732 NA coding downstream 149706 571856 ~ 577775 (-)
CI01000034_00881526_00896469 MKL1 coding upstream 148981 881202 ~ 896469 (-)
CI01000034_00934363_00941644 SLC25A17 coding upstream 200572 932793 ~ 941644 (-)
CI01000034_00956861_00961594 NA coding upstream 224323 956544 ~ 961594 (-)
CI01000034_00976338_00983692 NA coding upstream 243924 976145 ~ 984275 (-)
CI01000034_00984505_00989012 NA coding upstream 252198 984419 ~ 989885 (-)
G171382 NA non-coding downstream 173759 553304 ~ 553679 (-)
G171356 NA non-coding downstream 258730 465412 ~ 468708 (-)
G171309 NA non-coding downstream 285182 441287 ~ 442256 (-)
G171341 NA non-coding downstream 314401 412672 ~ 413037 (-)
G171340 NA non-coding downstream 315011 412193 ~ 412427 (-)
G171451 NA non-coding upstream 10845 743066 ~ 743771 (-)
G171530 NA non-coding upstream 231776 963997 ~ 964217 (-)
G171531 NA non-coding upstream 233618 965839 ~ 966103 (-)
G171404 NA non-coding upstream 346141 1078362 ~ 1080996 (-)
G171549 NA non-coding upstream 390196 1122417 ~ 1122719 (-)
G171229 NA other downstream 460192 229404 ~ 267246 (-)
CI01000034_01062505_01083413 NA other upstream 339392 1062444 ~ 1083413 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 579308 1311529 ~ 1312780 (-)
G171755 NA other upstream 1131897 1864118 ~ 1866373 (-)
G171835 NA other upstream 1709600 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 1777592 2510061 ~ 2511521 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025343 cbx7a coding NC_007114.7 CM002887.2 24986145 ~ 24994617 (+)
tiger barb (Puntius tetrazona) G178492 NA non-coding NW_025047891.1 JAEQBD010000236.1 206070 ~ 207393 (+)
mexican tetra (Astyanax mexicanus) G195115 NA non-coding NC_035919.1 CM008322.1 3347202 ~ 3351510 (+)