CI01000034_00956861_00961594


Basic Information

Item Value
gene id CI01000034_00956861_00961594
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 956544 ~ 961594 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_00956861_00961594.mRNA
CAGAGAGAAGACAGTGAGAAAAGAGAATCGGGAAAAGAACCACCCCAATGTGAAGACAAGGATCAGATCAAATTGGAAAACATCGACAAGCTCTTTAGCAGATTTGAACTCAGTCATGAAAACTCCTACAAACTGTCAAGAGTCTTTCTGCAGGTAACTCCTCCACTACAAAGGCATGAACCTTGTAATGAGAAGAATTTGGTTCAAACATATATACAAGGACTGCTGATGGCAGATTACACAGCAAGATACATTTCAATGAAAGAGGAAAAAAGTGAGGTGCTTAATGCAAAAGGCGCCATGGTTTCTGATGTGCAAGGGGGTAATGCCTTTGAAAACATTTTCAAGAGGTCTGTGCATGTTGATACGGGCAAAATACATCCCATTCACCCAATGGATATTCAGATGGCAGTGTTTCTCTGTGCCAATAATTTCCTTCGTCAGCTCATGGTAACAAAACTCTCACAATGTCAGTATGCTCTTCCTCTGCTTGTGCCTAATATATTTACCAAGGAGATTGAATTTCCCCTGTGGACCTTCAGGCAATTTAAGAAAAGCTGGAAGTCCCACGAAGAAAACATCAGTAAAAACCAGACAATCTACAAGGCTGAAACACCTATGGTTGCCTTTTTTAGATTTTCAGCAGTTTCTTCATCCAAATCAGAATTAATGAACAACCTGATCAATGAACGGCATGAAACTTTCTTCCACAGACACTGCCGTGGAAGCAGCAAATCTCGCCTGCTGATGGATGGAGTGGTTGAGATCGCCTGGTACTGCCCTTCTGGAGAGAAAACTGATAAATTCACGGATTGTGTTGCCTTCTGTAATCTTCATGGCGATGCACAAGCTAATGACACACAGCTACAAATTCTGACTGATAAGTCCTCAATAAATGTAGTGCTTTTGCCAAATCTTGATAGGAGTGACAAAAGTATGAAAATAGTGGAAGAGCTCTACAACAGCACAAAGCCTCTCATTTGCCTTCTGACTGAAGATGACTCAGGTGTTTCCAAGATGATGGAAGGCAAATATACAATTGGCTTGAAAGAAAGAAATAGATCAGATATATCAGAGGAACTTAGAAGAACCATCAATGAGTGCCTCTCAAAACCACTGTCAGTTTTCAAACTTGAGAATATGGGTGAACATTCAGGAATCAAAGTTGATGAGAATGATGATGACTGCAGGAGAGGAAAAGAGGCAGCAGAGAAGATGATGAGACTACTTGAGACCAAGGAAATGTCCAAAATCAAAGAAACATTTCTGCCTTGTCAGGGAAAACTGTGGCACGACTGGTGTCTAAAGAACAAAGAACTACATCGACCTCAAGGGAACAACATTGAAATGCATAACAGCCAAAAACAAACAGAAATGCACAAAATCCGTGAGCAGCAGAAAAAAATTGGCCTCAGTGAATTCTTAAAATTGTTTATTGAAAAACAAAATTCCATAAATGCTGCTGAGAAGATGTATTCCCTTAAATGGCTGGGGATCCTCCTGGACGAATATACTTCAAAAGATCTCTGCAAGCTTCATCAAGAGTATTATGAAACATGGTCAAAAGTGCTGGATTTGAAAAAGGAACATGATAAATCTGCGCAACTGACAGCAGAACAGTCACAACTAGAGAAGCTATCTGAAAAACTGAATTTAGCATCATTTGGCTTGGAGCACATATTAAGAGAGATTGCCCAGATATATGAATCACACATATCAGTGAGAAAGAATAAAAGATCTGGATGTAAACTAGATTCTCTCCCACAGTTTGCTGCAGAGCTCATGATCTCTGGATACCCACTGGAGCTGATGGACGGTGATGCATCTCATGTTCCTCTGATTTGGGTTCAAATGGTTCTAGATGAACTTATCAAAATGCTGGGAGACCAGAAAGTCTTTGTGTTGTCAATTTTGGGTATTCAGAGCACTGGAAAATCCACCATGCTGAATGCCATGTTTGGACTGCAGTTTGCGGTCAGCGCTGGGAGGTGTACCAGAGGAGCCTTCATGCAGCTGGTCAAGGTGTCAGAAGAACTGAAAACCCAGTTAAACTTTGACTACATTATTGTTGTCGATACTGAGGGACTTCATGCTCTAGAGTTGGCTGGCAGGTCAACAAGACATCATGATAATGAAATGGCAACATTTGTAGTCGGTCTTGGAAGCATGACTTTGATCAACATCTTTGGTGAAAATCCAGCTGAGATGCAGGACATCCTTCAGATTGTTGTTCAGGCCTTCTTGAGGATGAAGAAGGTGCGACTGAATCCCAGCTGCATGTTTGTGCATCAGAATGTTGGAGACATCACAGCGGGCGAGAAGAACATGGTAGGGAAAAGGCGCTTGCAGGAGAAACTAGATGAGATGACTCAACTAGCTGCTAAAGAAGAGGTCTGTGGTGCTGAATGTTTCAGTGACGTCATTGGATTTGATATAAAGACTGATGTGAGGTACTTTGCCCAACTCTGGGAAGGCAGCCCACCAATGGCTCCACCCAATCCAGGTTACAGTGAAAATGTGCAGGAGCTTAAGAACACAATCCTATCCCGTGCCTCACAATATAATTGTGTGACACTGACACAATTCAAAGATCGTATTGGAGACCTGTGGAACGCTCTTCTGAATGAAAACTTTGTTTTCAGTTTTAAGAATACTTTGGAAATTGCAACATACAGAAAATTAGAAGAGGAGTATGCAAAGTGGACCTGGAGTCTCAGAAGTGCCATGCTGGAGATTGAAGATAAATTGCACAACAGAATCAATAACAAGCAACTACATAAAGTTGAGAGTAGAGACTTGGAAAAGGAGATGGCAGAGACCAATGAAGAGGTGAAACAGTCCATGAAGCTTTACTTTGAAGAACACAAAGAAAAGGAGATGCTGATTCAGTGGAAATTGAAATTTCAAGAGAAAATCAACCACCTTCATTGGGAGCTTGTGAGAGATGCAAAAAGAAAACTAGAGAACATTATCTATCAAAAGAAAGCTCTCACCAAACTGGATGGAGAGAAAACTCTGCTTGAGCGAAAACTCCTTGAGAAAAGCAAAGAGTTTGCATTCAGACTCAAACAAAAAGGTCTTGATGAGAATGAGCTGAAGGCACAATTTGATACAGTGTGGGAAATGTGGGTCTCTGAGTTGGCAGGGAATGTTCAACCTTTTGAAGAACTTAACGTAGTAAGTGACATTATTACAATAATATCAGAAATTCATGAAAAAGCGCTTGTGCTTGACAGATTAAATAAATTTGAACGCATACATCAAATCACTGATTTCACCATATATGTAAATCTCATCGGAAAATTCTGGAAAAACAGACTGTTTGGCCTTCCACCAGAAGAACAAGAGTCAATAAAACAATTGGTGTACACTATTGGTCGTGAAACTGTGAACCAGGTGAAGTCAAAATCAGTTGCAAACACAGGCTACAACCCAAGCTACATTCAAGAAATTGCACAACTTGTAAAAATGAATGTAGGAAACCACAAGTGCAAAAAAGCACAATATGAATTCAAGAAAGAGTTCACAGTTGATCTGACGATCAGTGCTTGTAAGTGGGCAGGTGAGAAGTTTGCAGAGCTCCATCAGGTGTTCAGAAACAACAATGATCCTTCGATTTATTTAGAAAGAAAGAAACCTGAATACTACAGTGTGTTCCGGGGATTCTGCAAAGGAGCGAAATCTGCTGCAATATTTGGAGCTTTGATTTGTAGTGAGCTGAAAAACCCGATTCTCCAGAGTGCCTACAACAAGGCTGCAAATGATCTAGCAGGAGAGATGCGAACAAATATTCCAGCATTCAAAGGCAACAGGTCAAACCTGGAGAAACACATTCTGAAAGCACTAGCAGATGAGGAAGATTTTAAAAAGTTCATTCAGTATATACATTTACCAAGGAACCACTTTGAAGATTTCATCAAAGCTGAAGTGAAAGCATATTTAACAGGGGAGAACTCCCCAGCTCTTGCAATGATTAATGGGAACATCAAGAACAAGGGGCAATGCGTCATCACGGCTGCTGAAAAAGCAACAACTGAAGTCTCTAGGGAACATGGAGATGCCAATATGTGGCTGGAGATATTCTCAGAGTGTCTGAAAGACGAGCTTGAATACAGTAAAGAACATCTCACTGGTATCTGCTGTGAGGACATCACTAACTTTGAACTTCTAAATGAGGTTGTGAAAGAAGAACTTCAGCCCATCACAGAAGAGTCAAACAAATACTTAAAAAAACCCTCTGATATTGAAATGAAAATGTTCAGGGAACCACCAGATGAGATTTTGATTGAACACTTCTGCCAATGCTGCTGGGTTCAGTGTCCCTTCTGTGGTGTCGTCTGTGTTAACACAATGGAGGACCATCTTGGAGATCACATTGCTCCCTTCCATCGTAACTGTGGGATGAGAGGGATGATTTACAGAGGTACAGATAATCTTTGCTTGGAGTTCTGCACATCTTCAGTGGCAAGTGACAGCCAATCCTTTTACCCAACATCTGATTCAGATGAGACAGTTTTATGGAAGGAGTATAGAACAGCAGGTCCGGATTTTGAGAAATGGAGCATCACGCCTGATGTCTCAGAGCTGCCATTCTGGAAGTGGTTTGTGTGTCGATTCCAGAATGATTTGGAAAAGCATTACAACAAAACTTTCAGTGGTTATGGTAAGATTCCAAATGAATGGAGATCATTCACAAAAAATCAAGCTTTGCAGAGTTTGGAGAAATACCTGTAAGTCTAATTGCTGCCTTAAATTTTTAAAGTGGAACCAAAGTGTCCTGTAAGACCTAGAGTTTATTTCCAATAAGCTGTTCTCACCACTTTCTAAAGGCCTTTTTATGAAAAGATGTCATTATAATTAAATTTATGTCAGATTTTTAATTATTTTATATAGAAATGATTATGTGTACCATTGGTTTCCTTTTATGTTCAGGGTTTTTGATTGGTATTTTAATTGTTTTAATTACATAATTTGAAAAAAGTTTTTAAGTCTACTTTTTGTAACTGAAGTTTTTAGTAAATTTACCATCATATTCTTAGGATCCCAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_00956861_00961594.mRNA True 5051 mRNA 0.40 1 956544 961594

Neighbor

gene id symbol gene type direction distance location
CI01000034_00934363_00941644 SLC25A17 coding downstream 14900 932793 ~ 941644 (-)
CI01000034_00881526_00896469 MKL1 coding downstream 60075 881202 ~ 896469 (-)
CI01000034_00728121_00732221 NA coding downstream 224323 727438 ~ 732221 (-)
CI01000034_00648618_00659733 ST13 coding downstream 296811 647886 ~ 659733 (-)
CI01000034_00627328_00635193 NA coding downstream 321351 627019 ~ 635193 (-)
CI01000034_00976338_00983692 NA coding upstream 14551 976145 ~ 984275 (-)
CI01000034_00984505_00989012 NA coding upstream 22825 984419 ~ 989885 (-)
CI01000034_00994278_01019787 NA coding upstream 31904 993498 ~ 1019864 (-)
CI01000034_01021753_01050726 NA coding upstream 58528 1020122 ~ 1053355 (-)
CI01000034_01062505_01083413 NA coding upstream 100850 1062444 ~ 1083413 (-)
G171451 NA non-coding downstream 212773 743066 ~ 743771 (-)
G171382 NA non-coding downstream 402865 553304 ~ 553679 (-)
G171356 NA non-coding downstream 487836 465412 ~ 468708 (-)
G171309 NA non-coding downstream 514288 441287 ~ 442256 (-)
G171341 NA non-coding downstream 543507 412672 ~ 413037 (-)
G171530 NA non-coding upstream 2403 963997 ~ 964217 (-)
G171531 NA non-coding upstream 4245 965839 ~ 966103 (-)
G171404 NA non-coding upstream 116768 1078362 ~ 1080996 (-)
G171549 NA non-coding upstream 160823 1122417 ~ 1122719 (-)
G171405 NA non-coding upstream 164891 1126485 ~ 1127643 (-)
CI01000034_00571856_00577732 NA other downstream 372261 571856 ~ 577775 (-)
G171229 NA other downstream 689298 229404 ~ 267246 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 349935 1311529 ~ 1312780 (-)
G171755 NA other upstream 902524 1864118 ~ 1866373 (-)
G171835 NA other upstream 1480227 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 1548219 2510061 ~ 2511521 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025339 zmp:0000000912 coding NC_007114.7 CM002887.2 24655643 ~ 24660328 (+)