CI01000034_00994278_01019787


Basic Information

Item Value
gene id CI01000034_00994278_01019787
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 993498 ~ 1019864 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_00994278_01019787.mRNA
AAAGACTATGGTCATGATTGTAACCTCTATGAGAAATGTATAATTAATGTTAAGCGTATTTCAGAGAACCACAGGACATGGAAGAAGAGTCGGTCACAGACACTGAGTCTGAATCAGAACCAGACAGGAATAGATTGAGCAGCACAGGATCTGAGAGTCTGAGTGATAATGGCACAGAAAAAAGAGGGGAAAAGTGGGAAAAAAGGAATATAAAGAAACGAAGCTGTAACCAGCCAGGTCCTTCCTCTCTCTGTACACCTAGCAAGAAGCGACAATCCAAAGAATCCAGCCAGTATTTGAGACAAGATCAATCTGAACTTTTTGTTACATGTGGGGATAAAGAAGGTGTCCTGTATGTGGAGAAATATAATGACAGTACAGTTCAGAAATGCATCTTCAGTGAAGGCCAGTGGTTCAAGCCAAATGAATTTGAGAGGTTTGGAGGAAAAGAGAAGAACAAAAAGTGGAAGATTAGCATCTGTTGCAATGGTATTTCACTCCAGAAACTCATAGAGAACAGGAGAGAAGTTGTAAATTCAACTGAAGCTGTCAGTAAACAGATCACAGAACTGGTAGGATCTACTGCCAGTGACATAGAACGTGGAGTCTCTCCTGTCGTAAAGGAGAACGTCCAGACCACAGATGACCCAACCGGAGCAGCACAGCTCAGCTTCAGCGCTGCCCCTGAAAGGCAGAACCCTGTTGCTTCTGAAGAGACTCAGGAAACAAGGCAGCTACAATTATATGAATTTCTGACAAAACAGTTTAATACCATCAACAACACCCTGCAATCAATTGATTTATCTTTAAAGAAGCTGGTGGAAAAGCAGTCACATGACTCACTGTCACAATATATCCGTATAACTCCTGCTGAAAATTGTAAGATTCTTGCCTTAGTCAAGCAGGAGCCACCGAATTTAAAAACACAGGACATGGAAAGCAAGTCAGTCATAGACATAACCTCTGAGTCTGAATCAGAATCTGAATGGGATCTGGAGAGAAGCGCAGGATCCGACAGTCCGAGTGATAATGAGAGAGAAAAGAGAGGAAAACAAGAGAAGAAAAGGAAGATGAGGAAACGAAGCTGTAAACAGACAGGGCCGCACTCCCTCAGTACACCCAACAAGAAGAGCCCAGCCAAAGACTCCAGCCAGTATTTGAGTCAAAAATATGAAAACAAACTTCCTGTTACATGTGGGGATAAAAAAGGCGTCCTCTATGTGGAGAAATATAATGACAAGCAGAAGTGCATTTTAAGTGAAGGCCAGTGGTTCAAGCCCAATGAGTTTGAGCGGTTTGGAGGAAAGGAAAGGTGCAAAAATTCGACAAAAAGCATCTTTTGCGACGGTATTCAACTCCGGAAACTCATAGAGGATAGAGTTCTTTCACCAATTAAGAAAAGACTGGTTCAGAATGAACAGATCGACTCTCCTGAATCCTCACCTGTTACTGGCAGGCTCAGAAAAAGAAAGCAGAATGATGACGTGTGTTTCGTGTGTGACTCTGGGGGAGATCTTGTGTGTTGTGACGAATGTCCACGAGCTTTTCATTCACACTGTCATCTACCAGCTGCAGACGGAGACTCACTTGGAAGCCAGTGGAGCTGCACATTCTGTGTGATGAAGAATACGAAAGATTCCAGTCAAAAGACCCAACAGGAAGTTTTGAGCAGTCCAGTCTCTCAATACATACTGCACTGTCAGTACCTGCTGTTACACCTGCTACATGAGAGCATGACTGACCCCTGCACTAATGTTTCAGGATACAGTGAGAATATTTGTGGTCCCATGATGCTGGGCAGAGCAAAGCTGAACCTGGAGAATAACGATTATCAAACAGTGCAAGAGTTTGTCTCAGATATTGAACAGATTTTCAACAACTGTTGCACCTCCAGCGGAGATAATGACTCCAGTAGAATGACCTCTAAGCTGAAGGAAGCATTCAAAAAGGAGTTTGAAACTGTCTTTAAGCTCTTATAACATCATTGATTGTCAATATGTCAATACAGAAGTTACTATCAGGTTTTTATATTTTGAGCAACAAGAGGACATTCATTTTAATAACTGACAGTTTTTGAATGACAGCAACCATGGTCAACCTCCAGTCATTTAGCCTGTCCATGTCAGTGTACCTTGAAGGTGAAGTGTGTCATTTTTTGTGCCCTTAGCACAAAGTAGGTTTCCTAAACAGTCAAGTGGGTTTCCTAAATAGTCATTACATTTTCTATTGTTCATACAATCGAAAATGTAATCCACAGCCCTGCTCCAAATTCACAGTATTTTTTGAAGTTGTTTGACCACTCAAATAAACACTGTACTGTTTTAAAAGTACTTCAATGACGGCCATTTGAACTCTTTTGGAAATGAACCTAAAATGCTTTATTTATAGTTGACTCTACATATTAAGCTGGAATAGGAAAATGAATTTCAAAATCGAAAAATGTACACACTTGACAGTTGAATCTAAATGAACATGTTTACAATTCATATATTTTTTTACACATTGTTTAAAAATAACATTTTTTATTCTGCGGACTTGATTTATTTTATTTTTTTTTTGATACAATTTTTTTGATACCATTCTAATATAATTTTTCTGATACCATTCTGTTAAAAATGTGGACAGAAATATTTGAAAATTCAAGTATAATAGTAATGTCAAGTATAATAGTAATAGTCTTTAAGTGCTCAAAATGCAGATATTGACCTACTGTAAGATGACAGGTGAGAACAAATAACATATTGTGTATACTAATTAAA

Function

NR:

description
Zgc:113411

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_00994278_01019787.mRNA True 2759 mRNA 0.39 15 993498 1019864

Neighbor

gene id symbol gene type direction distance location
CI01000034_00984505_00989012 NA coding downstream 3613 984419 ~ 989885 (-)
CI01000034_00976338_00983692 NA coding downstream 9223 976145 ~ 984275 (-)
CI01000034_00956861_00961594 NA coding downstream 31904 956544 ~ 961594 (-)
CI01000034_00934363_00941644 SLC25A17 coding downstream 51854 932793 ~ 941644 (-)
CI01000034_00881526_00896469 MKL1 coding downstream 97029 881202 ~ 896469 (-)
CI01000034_01021753_01050726 NA coding upstream 258 1020122 ~ 1053355 (-)
CI01000034_01062505_01083413 NA coding upstream 42580 1062444 ~ 1083413 (-)
CI01000034_01102550_01104926 DNAL4B, DNAL4A, DNAL4, RGD1559781 coding upstream 82435 1102299 ~ 1104926 (-)
CI01000034_01109855_01118819 NA coding upstream 89975 1109839 ~ 1121584 (-)
CI01000034_01130811_01134095 NA coding upstream 109661 1129525 ~ 1134095 (-)
G171531 NA non-coding downstream 27395 965839 ~ 966103 (-)
G171530 NA non-coding downstream 29281 963997 ~ 964217 (-)
G171451 NA non-coding downstream 249727 743066 ~ 743771 (-)
G171382 NA non-coding downstream 439819 553304 ~ 553679 (-)
G171356 NA non-coding downstream 524790 465412 ~ 468708 (-)
G171404 NA non-coding upstream 58498 1078362 ~ 1080996 (-)
G171549 NA non-coding upstream 102553 1122417 ~ 1122719 (-)
G171405 NA non-coding upstream 106621 1126485 ~ 1127643 (-)
G171572 NA non-coding upstream 178114 1197978 ~ 1198270 (-)
G171582 NA non-coding upstream 228279 1248143 ~ 1248353 (-)
CI01000034_00571856_00577732 NA other downstream 409215 571856 ~ 577775 (-)
G171229 NA other downstream 726252 229404 ~ 267246 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 291665 1311529 ~ 1312780 (-)
G171755 NA other upstream 844254 1864118 ~ 1866373 (-)
G171835 NA other upstream 1421957 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 1489949 2510061 ~ 2511521 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025338 zgc:113411 coding NC_007114.7 CM002887.2 24640946 ~ 24649894 (+)