CI01000034_01308438_01309828 (ATF4B)


Basic Information

Item Value
gene id CI01000034_01308438_01309828
gene name ATF4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1308319 ~ 1310879 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01308438_01309828.mRNA
AGATCTTTTCTTCTCCCAGCTGATTTTTTTTGTTGATACTCGAGCGATTCTGCTCTCCGCCGAAATGGCCGTGTGAACTGCAGCCTGTAGACAGCGCGCAAACTCCTCAGTGCATCAACATAGTGCACTGGCTCAGTACATTTATATCAAAATGGCGTAAGTATATTTTTAATTGTTTTTGATTTAAAATGTCACGTCGTCTCACCCACCCGGCTGGGCGTGTGTGTACCATTAAATAATTAAGCCTTATTATGGCCGTTAATGTTTTCAAGTATTTTTAATGTGACTTAAATGTATATTGTGGATTTGTGAATTTTAATAGATAATAGAAATTGGCATGACCACCGTCTCGAGCTTAGCGCGCCATATGTCTACCCGACAGTGACAACATCAATCGATGAATTTTTAGTCATTTCTGTTTTAAAATGTACTATAATGTTTATATTTTGTATAGTGAATGCATCTCCAACCCGCCTGAATATGTTTAACTCAAAATAAACACGAGTGAGACAGTTTAATTGATTTCTTTGTCACCGCGTGCTCTTTATAAAATGGCGTACGTTCCTGAAAAGGGAGCGGCTAGTCCCTGAAATGGCGGAGTCTTTATCCACCTTGATTAAAAAAAAAAAAATAGAACATCGGAGTACATTTTACCTCGAACAACAACTAATCAACTAACTTTGGGATCTTATAAAAAGCAATGAGATTTTGCCTCTGGTAAACTGAGGTTGAGATTTTAGAAATGGAACCCAGTCTGCTGACAGTAAGTGATAAAGAATGTCACGTGGTAGATGCCATATATGGGTAGGGTGTCTGCAGATGACGTCATTGTGAGTCAGGAATAACTAATGAGGCTTTTTTTTTTTTTTTTTTTTTTCTCTTGCAAAGTAGCTATTGTGTGTTTGCATTTATGAAATTATGTAAGTGATTAACTACTTTTAATATGTTTACAGGTCCTTTGTGGCAACTCTGATCTTTGCTGTACCTGACAGCACGAAATTATTCGAATTCTCAGTAGAAGACTCGTTGATTCCACTTGAAATAGACAGCCATGTCTTTGATGAGCTCACGGTTTGGCCAGGACGATATGGAGGACCTTTTTTGGGACCCATCATCACCGATGGCTGACCCTCTGGGGTCCATCCTAGATAAAGATGAGGAGGTTCTTCCTCTCGGAGGCGCTGAATCGCCCCTCTCATCTTTCTCTTCCTCTCCACTTCCCTCTCTCTCACCACCCTGCACTCCTCCCTCCACTCAGAGGGGGGAGAAGGCTGGGCTCAATCAGCTGTCCCTGTCCTGGTTCCCCTCAGATGAGCTGTGCCTAGATAATCATGGTGCAGACAGTGGCAAAGATCATTCGTTCAGTGAAATGGATTGGATGACGGAGCGAATTGATTTGAGTGAGTTTGATCTGGAGTCTTTCATTGGCTCCTATGATTCTGAGGATCCACCCAGTTCTCCTGAGGAGCTCATCGCTTCTCTGGAGTCAGAGATAGACCTGGAGTCCCAGTCTGTAGCTTCTGACAATACGCCTTCACCCTCTCTAACAGTGTCTGTCCCTGAAATCAATCAACTTTCCAACCTTTCATTTACTTTGAATACTCCAGTTGCTACTCCTTTCATTCCCTCATCACCCTGTGAATTGTCAGATTCCTCCTCTGTGGTCCCTGAGCCCCAGGCTGAGTTTGAGATAAAGTCTGAACCGGCCTCCCCAGTCCCATCACCTTCCATCCTTCCACCCGAGTCCCCTACTGATACTCTTGAGCTTGGTTGCGAGGTGGACATAGCTGAAGTGCAGAGTCCATCCCCTGTCGAGATGCGGGTGCCCAAAATTGTCCTGTCCCTCTCCCCAACCCGCATCCTTCTTGTACTTTCTCCCAAAGAGGAGGTTAATGCGATGGTTACCCATCCAGGTGAGGTGGTTGTGGAGAATTCCCCAAGTCCAACTTCCCCTGACCCACAAATCCCAACCTCTCCCCAGTCTCTGTCTTCTAGGGTGAAGTCCTACCCCACACCTGATTCTAAGCCCACCCAAAATCAGCAGTCAGAGTCGCCTACCCTCGCAGGAAGAGTGAAGTCAGTCAGTGGCTCAAAGGTTGTGGTTGAGAAGAAAAAGCTGAAGAAAATGGAGCAGAACAAGACTGCGGCGACCCGCTACAGACAGAAAAAGCGTGCAGAGCAAGAGGCCCTCCAGTCAGAGTGTACAGTCCTTGAGGAGAGGAATCAAGAGCTGGTGGAAAAAGCAGAGTCCATAGCTAAAGAGATCCAGTACCTGAAAGAGCTAATGGAAGAAGTCAAGAGGGCAAGAGAGAGCAAAAGTGTGAGGTCATAGAATAATATGGACACAGAGGCTTGAAGCTGAGAGAAATGGACGGTTTCAGCATAGCCTGAAGTGCAGAATACTAGGAATGTTGGTTCTAAAAGAAAGTATTTTATGAAGGGTTGAATAAA

Function

symbol description
atf4b Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be part of ATF1-ATF4 transcription factor complex and ATF4-CREB1 transcription factor complex. Predicted to be active in nucleus. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in prostate carcinoma. Orthologous to human ATF4 (activating transcription factor 4).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04374 ATF4, CREB2; cyclic AMP-dependent transcription factor ATF-4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01308438_01309828.mRNA True 2451 mRNA 0.45 2 1308319 1310879

Neighbor

gene id symbol gene type direction distance location
CI01000034_01294226_01301994 ADSL coding downstream 6325 1294176 ~ 1301994 (-)
CI01000034_01286141_01289408 NA coding downstream 18911 1285074 ~ 1289408 (-)
CI01000034_01234426_01238796 NA coding downstream 69523 1234378 ~ 1238796 (-)
CI01000034_01150993_01154752 PRVA, PVALB6 coding downstream 153567 1150929 ~ 1154752 (-)
CI01000034_01130811_01134095 NA coding downstream 174224 1129525 ~ 1134095 (-)
CI01000034_01312431_01312780 PRR15LA coding upstream 665 1311529 ~ 1312780 (-)
CI01000034_01323481_01381800 COPZ2 coding upstream 12499 1323378 ~ 1383472 (-)
CI01000034_01398718_01404884 CBX1A coding upstream 87839 1398718 ~ 1404884 (-)
CI01000034_01498024_01498299 NA coding upstream 186201 1497080 ~ 1499836 (-)
CI01000034_01603228_01604932 HOXB1A coding upstream 291555 1602434 ~ 1605430 (-)
G171582 NA non-coding downstream 59966 1248143 ~ 1248353 (-)
G171572 NA non-coding downstream 110049 1197978 ~ 1198270 (-)
G171405 NA non-coding downstream 180676 1126485 ~ 1127643 (-)
G171549 NA non-coding downstream 185600 1122417 ~ 1122719 (-)
G171404 NA non-coding downstream 227323 1078362 ~ 1080996 (-)
G171631 NA non-coding upstream 89445 1400324 ~ 1401912 (-)
G171704 NA non-coding upstream 399799 1710678 ~ 1710957 (-)
G171712 NA non-coding upstream 429765 1740644 ~ 1741140 (-)
G171724 NA non-coding upstream 453622 1764501 ~ 1768078 (-)
G171731 NA non-coding upstream 469967 1780846 ~ 1781056 (-)
CI01000034_01062505_01083413 NA other downstream 231097 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 724036 571856 ~ 577775 (-)
G171229 NA other downstream 1041073 229404 ~ 267246 (-)
G171755 NA other upstream 553239 1864118 ~ 1866373 (-)
G171835 NA other upstream 1130942 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 1198934 2510061 ~ 2511521 (-)
G172016 NA other upstream 1924084 3234963 ~ 3236615 (-)

Expression


Co-expression Network