CI01000034_01312431_01312780 (PRR15LA)


Basic Information

Item Value
gene id CI01000034_01312431_01312780
gene name PRR15LA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1311529 ~ 1312780 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01312431_01312780.mRNA
AGTCTGTTTTCATCTCGATGGCGACCGCAGAACCTGCACCAGCCTGGTGGAAACTGACCTTCCTGCGTAAGAAGAAATCGGAGTCGAAAGTGTTGTACGAAATCCCTGGAGACCACAGCAGCAATGCCGGGGAGACACCTGGGACCCCCGACGCAGCTGTGGACAGCCAGTTTAACGCCCGCTTGGAGCGCATCGTGGACAAAACGGCAACAAAGGGGCGCCATGTGAAAGTCTCACATTCGGGCCGGTTTAAAGAGAAGAAGAGAATCCGCTCTACGCTAGCAGAGAACCCTGACCTGTTCCCTGAGGCAGAAACTACGACTAGCGAGAATAATACAACTGGAAAATAGAGTCACTGTGTAAACACACTAGCATGTGTGTGTAAAACAGCTCAAGAGGGCCTTGGTCTATGCAGCACTCTTCCATTGATGTCCTCTGTAGTTTACAATCACCTGAGGCTGAGCCTGAAGCAAGAAAAGGATCGCTGAATGAATTAGTGACTGATCTATACTAATGTTTGGGAACAAAGACAGGCATAAACCCAAAGATCAGGTTTCTTCACAGATACACACAGCAGGACTGCATTGTGGTCGTCTGATGAAAGGCTGACATTTAGCAAATGTTTAGCAAAGAGAAATCCACTGAGAGGGAATCAAATCAATCATATATCAGCACAAGATATCAGTAATGATAGTGGGTTTTTTGCTTATTCTATTTTATATGGTGAAAATTACAATAGCGGCTACAGCACTTTTGATTCAAAAGATTTAAGGAATATTATCAGCAATAATATGCTACTAAGTTAAAAGATCATATAGAGACTTTTATTCAAAATTTAAATTGTAGCCTACCTAATTATATAAAATAGATTGTTGTTATTATTATCACTGTTATTTTTTTATTTTTTATTTTTTTTTGGCCTCCGAACCACCAACTAGACTAAAATATTTTTTTGAATACATGTGCCTGTTGCAAGAATATACTATTTTATGTCTGTGTTGATGTGTCTGGTTTAATTATGATCTTTGATCTTTGATATTTATTGTACAGAGAGTTTATAAAATTTAATTAGAACATGGTGGGTTTTTCAAATTTTAATTATTGTGCTTTTTATGTTGAAAGAAATGGTCAAATATTTGCACAATGCCTAATTTAATTGTTTGATTAGCTGGGATTTTGTAAAAAAAAAATAAAATAAATACGTGTTGTTTTTAAATATACCTCTGTGGAAAATAAA

Function

symbol description
prr15la Is expressed in lateral line system; otic placode; otic vesicle; and pronephric duct. Orthologous to human PRR15L (proline rich 15 like).

NR:

description
atad4-B

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01312431_01312780.mRNA False 1237 mRNA 0.38 1 1311544 1312780

Neighbor

gene id symbol gene type direction distance location
CI01000034_01308438_01309828 ATF4B coding downstream 665 1308319 ~ 1310879 (-)
CI01000034_01294226_01301994 ADSL coding downstream 9550 1294176 ~ 1301994 (-)
CI01000034_01286141_01289408 NA coding downstream 22136 1285074 ~ 1289408 (-)
CI01000034_01234426_01238796 NA coding downstream 72748 1234378 ~ 1238796 (-)
CI01000034_01150993_01154752 PRVA, PVALB6 coding downstream 156792 1150929 ~ 1154752 (-)
CI01000034_01323481_01381800 COPZ2 coding upstream 10598 1323378 ~ 1383472 (-)
CI01000034_01398718_01404884 CBX1A coding upstream 85938 1398718 ~ 1404884 (-)
CI01000034_01498024_01498299 NA coding upstream 184300 1497080 ~ 1499836 (-)
CI01000034_01603228_01604932 HOXB1A coding upstream 289654 1602434 ~ 1605430 (-)
CI01000034_01621979_01623991 HOXB2, HOXB2A coding upstream 309009 1621789 ~ 1624069 (-)
G171582 NA non-coding downstream 63191 1248143 ~ 1248353 (-)
G171572 NA non-coding downstream 113274 1197978 ~ 1198270 (-)
G171405 NA non-coding downstream 183901 1126485 ~ 1127643 (-)
G171549 NA non-coding downstream 188825 1122417 ~ 1122719 (-)
G171404 NA non-coding downstream 230548 1078362 ~ 1080996 (-)
G171631 NA non-coding upstream 87544 1400324 ~ 1401912 (-)
G171704 NA non-coding upstream 397898 1710678 ~ 1710957 (-)
G171712 NA non-coding upstream 427864 1740644 ~ 1741140 (-)
G171724 NA non-coding upstream 451721 1764501 ~ 1768078 (-)
G171731 NA non-coding upstream 468066 1780846 ~ 1781056 (-)
CI01000034_01062505_01083413 NA other downstream 234322 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 727261 571856 ~ 577775 (-)
G171229 NA other downstream 1044298 229404 ~ 267246 (-)
G171755 NA other upstream 551338 1864118 ~ 1866373 (-)
G171835 NA other upstream 1129041 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 1197033 2510061 ~ 2511521 (-)
G172016 NA other upstream 1922183 3234963 ~ 3236615 (-)
G172151 NA other upstream 2078733 3391144 ~ 3451802 (-)

Expression


Co-expression Network