CI01000034_01383935_01395565


Basic Information

Item Value
gene id CI01000034_01383935_01395565
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1383591 ~ 1396448 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01383935_01395565.mRNA
ATATATAAAGAGAAAATAGTTGCTGTCGAAAACATATTCCTCCATAGATTCCAAGAGAAAAACTGCGCACAAGCTGCCAAAGCCAGTCGGTCTACTATTTCAACGTTTACAGTGAATAAAAGAAAAATAAGCGATTAAATGGTAAACATATCTCACCAGAGCCGCGGAGTCCATGGTGGTAGCACAGTGTTGACGTGGACAGCTTTGAGCTGTCATTACAGTAGCGCTCCTAAAACCCTCTGACTCACAGGGGGCGTGTCTGCAACTACAGCCCTCAAGCCGCCATGTTGGCTCAAACCTACAATAACGTTCTGCGTCGGCAGCGCTGCCATACATGAGCCAAAATGGCGGCTTTCATCGTAAGCTCTCGTTTGTTGAGAAGTCTTGGGAACGAAATTAATATTTTTGGCGTCATGTCATTTGCTCTAATCATCCAAGAGGAGTGTCCTGCTCTCACGCCTTTCTATAGTGACTGCGAGAACTCTAAGTCCGTAGACAAGTTTTGCAAGCTCCTGGCACTGGTTTGGGCCATGCCGGACCTGAAGAAGTACTTCATCGAGGGCCTGATTCAAGTGGCTATTCTTCTCAGTCTGTCCGGGATGCGTGTGGGCGTGGATCCCTACCTGCCCCCTTTTAGCGAAATCATTCAGGGCCCAAGTTTAGCTCTAACTCAGACTCAATTCCACAATCTCCGAAACATCCTGGATGGATATAACCTGCACCCAAAAAGCATAGACCTAGATGGGTTCTTCACAGCCCGCAGGCTTCTGAGTTGGGTACGTTCCCTAGACCGCCTGCAGGTGCCAGCGGCAGAGTTGGAAGCCTGGTTGGTCCACAGCGAGCCTGACAATGGAGTCTCCATTCCAGGTCAAGTGGGTCTGCTTGAGGAAGCTGGAGGACTTGAAGATGTGGAGGAACCCTCAGAGCTAAGCATGAGGTTGGGAAATGGAGGAGAACTGGGTTATGATGTACTTGAGGACCAAACCCTTGGACCTTTGGGGCACATGCCAAGAAACCTCAACCATTCAGACGATGATGAACTCATTAAAGAGGAGGGAGATGGTATGTCTTTCGACTGGGAACAAGAACCTCAGCAAAATGTCCACCAGGAACAGTTGGAAAATACAAGAACACAACCTCTCAGCTTGTTTAATGAGGAAGAAGAGGATGAATTTATGGTGGATAGCTGGAGAAATACAAATCCCTTTCACAACCAGATGTTTGGAGAGGATGTACAGCTGTCAGGTGTAAGGGAAGACACTTCTCTTTCCATTGAAGAGTGCTTGCATCTCATCGATGCCAACTTCCCCTCAGAAGAGGATCCAGAGTTGACAGGTCCTGGTTTACAGAATGTAGGAGAACATACACTTCAGTTTCAGAGGCCACTCATCTCACCCTTGTTGCCTGAACAGGAATCCGCATTTACCTTAGAGCAACAGTGGCAAGATGTTTTGTCCATCATGGAGTCACAGGACATGGATATAGCCGAAACAACAGGCGATTCCCCCCTCAATACAAGTGATTCAGACAGAAATACTGGATCCATGGACAGCTTTATTCATCAGGATGTTAGCCTTCACCAAGCCACTCTGCCAAGATCCACCGAAGCACAAAACAGCATCACCATGGAAGAAACCTGTCAGATTAACAACTACTCCATGCCAAACATCAACTTGGACACCTCTGCTAATGTAGAAGCTTTTGAAGACTCGGATATCATAGACCTCCTTACTGGGACTTGCCTGCCAAGCCCATTAGATCCTCTGCTGGAGGAAGCCATGCTTGATGAGATTGGACTAATGGATTTGGCCTTGGAAGAACCTAGCCAGGCACAATCTGAAGAGCAAAACCAAGCAGATTCTGACTCTGGTTTATCCTTGGACTATAGCCAAAGCCTTACCTCCCCTAGTGGATCTGAATCTTCCAGCTCCTCATCATCTTCTTCATGCTCTTCATCACCCTCGAGCCCAACCCCTAGTTTGATGCCCGAGGAAGGTGCCGTGGGCTACACCCATATCAAGGAGGAGGATGATGATGGAGCTGTGGGTGGCTTCATGCCAGAACAAACCAAAATGTGTCAGTCAAGTTTTTTGGAAGCCAGGCAGTTCCATCATCTTCCTTGGCTCGAACACATCGGACACGATCATACCTACAACCAACCTCAAATCCAGAAGAAACCTCCAAAAGATCCTTTCGATGAGTCCAAAGAGAAAGCGCTGGAGCATCTGTCCAGCCGGGATGAGAAACGTGCACGTTCGTTGAATATCCCGTTATCCAACGAAAGCATTGTAAACTCGCCCGTTGAGGAGTTCAATCGTTTGCTAGCAAAATATCATCTCAATGAAGCTCAGCTAACGCTCATCAGAGACATTCGCCGCAGGGGTAAAAACAAAATGGCTGCTCAGAACTGTCGTCGAAGGAAGCTAGATGTCCTAGTGGGATTGGAGCGTAATGTGGATAGCCTGCGACGCCTCCGGATCAGACTGCTTAGGGAAAAGTCTGAGATCTTGTGCTCCATCAGGGAGATTAAGCAGCTTCTTAATAGCCTGTATCAAGAGGTATATGAGAGACTAAGGGAGGAACAGGGACTGCTCTACTCTGACAACAACTTTACTTTGCAGGAAGACTGCACCAGCCCTATAACATCACAACGCAGATCAGATTCACACTCCAGACGCAAACTTAGCAAGAGACAAAAACGCAAGAAGTGAGGAAGACTCTGCAATGAGCTGATGTTGATTAGTTCATGTCCACCTGCTGGTTTTCCACAGTCCAAAGGAAATTTGCACCAAGTAGGGTATTTTTACCCAAGAGAAGATGCTGTGTAGGCACATAATACAACTTGACCGAAATTGAAGTTCTACAAAGATTTGATGTTAATTTAAAGGGCAATGCGAGTTTCCTTGACTTCTGACATAAAAAAAGACGTTTAAATATACTCTAAAAACAGAGTAACAGGCAGCAAATGTGCGGTTTGTGCCTGAGGCTGAGTCTAGCCAGAGAAAGCACTCAAAGCTGTAGCCGATGTCACATGTAAAGCAGGCGTTTCTTAAAGGCACAGCAGTAAATAATAGAGTTTATTTCTAAGGGCCACAGAGAGGGTGGAAAATTGCCAAAAAAGCTCAAATCTGACTTTAACAACACCTTTTAAAAAAAATCACATTTTTAGTGACATTTTTATGAATATTGCAGTTTATCGACTATTTATAAATGTATTATGATTTATCTGTGCACGTGATGACGTGTGCAAGGGCAGGACAAAAATCTCTCCTTTCCAGCAACCTGTCACTGATTTACATGAGATTACAGCAATTAGCAAAAAAAAAAAAAAATCGATTCCCAATAGAGAAAATCCTATTTTTCTTGCTCCGTTTCATTTGGATGTATCACAATATAGAAGAAAAGACAATCACAACATTCATGCTGACTTTAAGAACCAAACTGGGCTACAAAAACATCAGGAGTATCGGAAATTGTTCCCAAAAACCAGTAAAATAATCCTATGTTAGAATGGCAATTGTGTTTGGAATTATGCTTGGAATCCAAGTATTGAAACAAAGTTTTAATGCATTTTAAATATTGCTTACTGGTTTA
>TU192529
ATACATGAGCCAAAATGGCGGCTTTCATCGTAAGCTCTCGTTTGTTGAGAAGTCTTGGGAACGAAATTAATATTTTTGGCGTCATGTCATTTGCTCTAGTAAGTAACTCGTTTTGAATAGAAGGTTTCACGTGACTGCCACATCCGACAGGACATTCAATGAATAGATAATGAACGACTGCTGTAAACCAATGAATTATGTAACGTCACCTCTTACTAGCGCGACAGGGG

Function

NR:

description
nuclear factor-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01383935_01395565.mRNA False 3594 mRNA 0.45 7 1383591 1396448
TU192529 True 230 lncRNA 0.41 1 1383921 1384150

Neighbor

gene id symbol gene type direction distance location
CI01000034_01305634_01306636 NA coding upstream 76747 1305634 ~ 1306844 (+)
CI01000034_01210160_01223724 NA coding upstream 159722 1210160 ~ 1223869 (+)
CI01000034_01139725_01146104 BAIAP2L2A coding upstream 237267 1139725 ~ 1146324 (+)
CI01000034_01124686_01125224 NA coding upstream 257394 1124686 ~ 1126197 (+)
CI01000034_00951238_00955839 NA coding upstream 427504 950467 ~ 956087 (+)
CI01000034_01632580_01633233 NA coding downstream 235554 1632002 ~ 1633525 (+)
CI01000034_01637348_01637904 NA coding downstream 240163 1636611 ~ 1638009 (+)
CI01000034_01657515_01658817 NA coding downstream 260762 1657210 ~ 1659106 (+)
CI01000034_01729413_01730790 EVE1 coding downstream 332965 1729413 ~ 1731179 (+)
CI01000034_01764505_01767882 ATP5G1, ATP5G3 coding downstream 368057 1764505 ~ 1767922 (+)
G169461 NA non-coding upstream 14227 1369136 ~ 1369364 (+)
G169460 NA non-coding upstream 18007 1365205 ~ 1365584 (+)
G169458 NA non-coding upstream 26351 1356993 ~ 1357240 (+)
G169456 NA non-coding upstream 30145 1353158 ~ 1353446 (+)
G169435 NA non-coding upstream 81524 1294169 ~ 1302067 (+)
G169345 NA non-coding downstream 8365 1404813 ~ 1410866 (+)
G169561 NA non-coding downstream 195075 1591523 ~ 1591760 (+)
G169565 NA non-coding downstream 205927 1602375 ~ 1605021 (+)
G169569 NA non-coding downstream 210318 1606766 ~ 1606974 (+)
G169570 NA non-coding downstream 211079 1607527 ~ 1607834 (+)
G169340 NA other upstream 72713 1250219 ~ 1310878 (+)
G169394 NA other upstream 190031 1150297 ~ 1193560 (+)
G169357 NA other upstream 264572 1053543 ~ 1119019 (+)
G169309 NA other upstream 413670 969261 ~ 969921 (+)
CI01000034_00643011_00645310 RBX1 other upstream 737181 642901 ~ 645310 (+)
G169806 NA other downstream 921525 2317973 ~ 2337690 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other downstream 2037688 3432846 ~ 3438839 (+)
CI01000034_04125435_04125780 RPRML other downstream 2728652 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 2798190 4192311 ~ 4200636 (+)

Expression


Co-expression Network