CI01000034_01680053_01683539 (HOXB7A)


Basic Information

Item Value
gene id CI01000034_01680053_01683539
gene name HOXB7A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1679589 ~ 1683539 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01680053_01683539.mRNA
ATGTACACTAACGGTGGTAGTCTTTCCAGCCAGACTCAAGGCATGTACCCCACTGCGTATGAGCTGGGAGCTGTCTCTTTGAACATGCACAGCTCTCTGTTTGACCATCCGAATCTACCCATGGTGAGCGCTGGCGATCTCTGTAAAGCGCAAAGCAGTGGTAAGGAAGAGCAGAGGGGCTACCATCAAAACAACGAAAACAACCTCCGTATCTATCCGTGGATGAGGAGCACAGATTGTGCTAGATTGTATCAACAAAAAGTGTCACGGCGTTGCCGACAACACGGAAGTGCTGACCGGAAAAGAGGCCGTCAGACATATTCCCGCTATCAAACTTTAGAGTTGGAGAAAGAATTCCACTTCAACCGTTACCTTTCACGACGGCGGCGTATAGAGATTGCACACGCCCTGTGCTTGACCGAACGCCAGATTAAAATCTGGTTTCAAAACAGAAGGATGAAATGGAAGAAAGAGAACAAATCAACGGGCCGCAGCTCTCCTGCTGCTGACCAAATCGGGGGTGACGACGAAGAGGAAGATGAGTAGCGACGCAAGTGACATAAAAATAGACTGTTATATACTATCGATTCTGCTTTAATTCAGGATTCACTGAGATGAAAAAAAAAGTTGCTACTTACAATACTGTGGGCAAAGTATCAACGTCGTTTACCTTGTGTTAGAGGAGTTAATGTCTAGACTCGTAAATATAGTAATACAAGTAATTTTAAAACACACTTTAATATAGATGTATACATTTAACACTCATACTGTATAATAGCCTAAATTATATATATAGGCTTAATACTAGTGTTAATAATACTATATCATATGTTTCATATATTTGTGACATATTTGTGGCCTGTTAAGTTCGACCTGCGGGGTAAAACACAGAAGGGAGCAAGCTATTTTTTTTTTCTTTCTAAATTTGGTATACCCCTGTTGTGTATCTATGTGTAAATTTTTGTATGTATAAGCATTTTCCCTGTTCATAGGCTAAGTGTTAAAATAAA

Function

symbol description
hoxb7a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; mesoderm; neural tube; somite; and tail bud. Orthologous to human HOXB7 (homeobox B7).

NR:

description
homeobox b7a, partial

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09307 HOX_7; homeobox protein HoxA/B7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01680053_01683539.mRNA True 1010 mRNA 0.41 3 1679589 1683539

Neighbor

gene id symbol gene type direction distance location
CI01000034_01675050_01677339 NA coding downstream 890 1674793 ~ 1678699 (-)
CI01000034_01670204_01671915 HOXB6AA, HOXB6A, HOXB6AB, HOXB6 coding downstream 7654 1669903 ~ 1671935 (-)
CI01000034_01666303_01667765 HOXB5A, HOXB5AA, HOXB5 coding downstream 11689 1666064 ~ 1667900 (-)
CI01000034_01652735_01654473 HOXB4, HOXB4A, HOXB4AB, HOXB4AA coding downstream 23983 1652277 ~ 1655606 (-)
CI01000034_01648924_01649935 NA coding downstream 29186 1648898 ~ 1650403 (-)
CI01000034_01684215_01687260 HOXB8AB, HOXB8, HOXB8A, HOXB8AA coding upstream 638 1684177 ~ 1687260 (-)
CI01000034_01694301_01697568 HOXB9, HOXB9AB, HOXB9A coding upstream 10502 1694041 ~ 1698427 (-)
CI01000034_01703545_01705527 HOXB10A, HOXD10A, HOXA10 coding upstream 19353 1702892 ~ 1706043 (-)
CI01000034_01718736_01720031 HOXB13, HOXB13AB, HOXB13A, HOXB13AA coding upstream 35067 1718606 ~ 1720246 (-)
CI01000034_01785791_01788743 NA coding upstream 101696 1785235 ~ 1789815 (-)
G171631 NA non-coding downstream 277677 1400324 ~ 1401912 (-)
G171582 NA non-coding downstream 431236 1248143 ~ 1248353 (-)
G171572 NA non-coding downstream 481319 1197978 ~ 1198270 (-)
G171405 NA non-coding downstream 551946 1126485 ~ 1127643 (-)
G171549 NA non-coding downstream 556870 1122417 ~ 1122719 (-)
G171704 NA non-coding upstream 27139 1710678 ~ 1710957 (-)
G171712 NA non-coding upstream 57105 1740644 ~ 1741140 (-)
G171724 NA non-coding upstream 80962 1764501 ~ 1768078 (-)
G171731 NA non-coding upstream 97307 1780846 ~ 1781056 (-)
G171751 NA non-coding upstream 144057 1827596 ~ 1830627 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 361335 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 602367 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1095306 571856 ~ 577775 (-)
G171229 NA other downstream 1412343 229404 ~ 267246 (-)
G171755 NA other upstream 180579 1864118 ~ 1866373 (-)
G171835 NA other upstream 758282 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 826274 2510061 ~ 2511521 (-)
G172016 NA other upstream 1551424 3234963 ~ 3236615 (-)
G172151 NA other upstream 1707974 3391144 ~ 3451802 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025306 hoxb7a coding NC_007114.7 CM002887.2 23691847 ~ 23696208 (+)