CI01000034_01684215_01687260 (HOXB8AB, HOXB8, HOXB8A, HOXB8AA)


Basic Information

Item Value
gene id CI01000034_01684215_01687260
gene name HOXB8AB, HOXB8, HOXB8A, HOXB8AA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1684177 ~ 1687260 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01684215_01687260.mRNA
ATGAGCTCATATTTCGTCAACTCTCTCTTCACTAAATACAAAAGTGGAGACACTCTGCGGCCGAACTATTACGAGTGCGGATTTGCTCAAGACCTAGGGACGAGACCCACCGTCGTGTACGGTCCAGGCACCGGGGCCACTTTCCAGCATGCCCCTCAGATTCAGGAGTTTTACCATCACGGCGCATCCACGCTCTCCGCAGCGCCTTACCAGCAGAGTCCCTGTGCGGTAACTTGTCACGGCGAGCCGGGAAACTTCTACAGTTATGATGCTCTCCAGAGGCAAACACTTTTCGGTGCTCAAGATGCCGACTTGGTTCAGTATAGCGACTGCAAACTCGCCACGGGGGGCATCGGCGACGAGACGGACAACACAGAACAGAGTCCGTCGCCCACACAGCTGTTCCCGTGGATGCGACCTCAAGTAGCTGCCGGACGGAGGCGAGGCCGCCAGACCTATAGCCGCTATCAGACGCTCGAACTCGAGAAAGAGTTTCTCTTCAATCCCTACCTAACACGCAAGAGACGGATTGAGGTATCACACGCTTTGGGACTGACAGAACGACAAGTCAAAATCTGGTTTCAAAACCGTCGCATGAAATGGAAAAAGGAAAACAACAAGGACAAGTTTCCAAGCAGCAAGTCTGAACAAGAGCAGATCGAAAAAGAGAAACGGGAGAAAGAACAGGCATCCGGGACACAGCTATACGGATGCTTTGAAGCAGAAACTAGTAAGGGCCAGAGTCATCATGCTCTTGACACGGACACACTGTACAGACATTGCAAAAATGCAGTGATGAGATTCGGGGAAGAGCACCGGTGACAAGAGGAAATAGTGTTGAAAATCAATACAGAAATAAA

Function

symbol description
hoxb8a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell population proliferation and posterior lateral line neuromast primordium migration. Predicted to be active in nucleus. Is expressed in several structures, including nervous system; neural tube; pancreatic system; paraxial mesoderm; and pronephros. Orthologous to human HOXB8 (homeobox B8).
hoxb8 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in negative regulation of myeloid cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including dorsal spinal cord development; embryonic skeletal system morphogenesis; and grooming behavior. Located in nucleoplasm.

NR:

description
homeodomain protein, partial

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09308 HOX_8; homeobox protein HoxB/C/D8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01684215_01687260.mRNA True 860 mRNA 0.51 3 1684177 1687260

Neighbor

gene id symbol gene type direction distance location
CI01000034_01680053_01683539 HOXB7A coding downstream 638 1679589 ~ 1683539 (-)
CI01000034_01675050_01677339 NA coding downstream 5478 1674793 ~ 1678699 (-)
CI01000034_01670204_01671915 HOXB6AA, HOXB6A, HOXB6AB, HOXB6 coding downstream 12242 1669903 ~ 1671935 (-)
CI01000034_01666303_01667765 HOXB5A, HOXB5AA, HOXB5 coding downstream 16277 1666064 ~ 1667900 (-)
CI01000034_01652735_01654473 HOXB4, HOXB4A, HOXB4AB, HOXB4AA coding downstream 28571 1652277 ~ 1655606 (-)
CI01000034_01694301_01697568 HOXB9, HOXB9AB, HOXB9A coding upstream 6781 1694041 ~ 1698427 (-)
CI01000034_01703545_01705527 HOXB10A, HOXD10A, HOXA10 coding upstream 15632 1702892 ~ 1706043 (-)
CI01000034_01718736_01720031 HOXB13, HOXB13AB, HOXB13A, HOXB13AA coding upstream 31346 1718606 ~ 1720246 (-)
CI01000034_01785791_01788743 NA coding upstream 97975 1785235 ~ 1789815 (-)
CI01000034_01842093_01847705 NR1D1 coding upstream 153677 1840937 ~ 1847705 (-)
G171631 NA non-coding downstream 282265 1400324 ~ 1401912 (-)
G171582 NA non-coding downstream 435824 1248143 ~ 1248353 (-)
G171572 NA non-coding downstream 485907 1197978 ~ 1198270 (-)
G171405 NA non-coding downstream 556534 1126485 ~ 1127643 (-)
G171549 NA non-coding downstream 561458 1122417 ~ 1122719 (-)
G171704 NA non-coding upstream 23418 1710678 ~ 1710957 (-)
G171712 NA non-coding upstream 53384 1740644 ~ 1741140 (-)
G171724 NA non-coding upstream 77241 1764501 ~ 1768078 (-)
G171731 NA non-coding upstream 93586 1780846 ~ 1781056 (-)
G171751 NA non-coding upstream 140336 1827596 ~ 1830627 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 365923 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 606955 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1099894 571856 ~ 577775 (-)
G171229 NA other downstream 1416931 229404 ~ 267246 (-)
G171755 NA other upstream 176858 1864118 ~ 1866373 (-)
G171835 NA other upstream 754561 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 822553 2510061 ~ 2511521 (-)
G172016 NA other upstream 1547703 3234963 ~ 3236615 (-)
G172151 NA other upstream 1704253 3391144 ~ 3451802 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025305 hoxb8a coding NC_007114.7 CM002887.2 23687909 ~ 23690481 (+)