CI01000034_01842093_01847705 (NR1D1)


Basic Information

Item Value
gene id CI01000034_01842093_01847705
gene name NR1D1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1840937 ~ 1847705 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01842093_01847705.mRNA
GCGAGTGTCGAAGATCCTTATTCGATTCACATGTACCGCCGAGCCTAGCCATGTGCTTTTTGTTTTCATTCTTCGCTCTCCGCCTACAGCCATTGGTGGGGTAATATCATACATCGGATCGTGTGGAGGCTCTCCCAACCGCACCAGCCCCGTGTCCATGTACAGTGAGAACTCCAACAGCAGCCTGCAGTCCTTTACGCAACCCTGCTTTGGTTCTTCATTCCCACCATCCCCCAATGGATCCCATGATTCCTCTCGCATGTACACCAGCAGCAGTAGCAGCAGCAGCTCGAGTTCTGGATCAGGAGAGGAGGGAAACTCATCATGCTCTAGTGGATCCCCAAGAGGCCGTGATGATGGTGGAAGTGCACGCAATTCACCCAACAAATCAGTTGCCACCCTTACTAAGCTGAATGGAATGGTGTTGCTGTGCAAAGTGTGTGGCGATGTGGCTTCCGGTTTTCACTATGGTGTCCATGCCTGTGAGGGCTGCAAGGGTTTCTTTCGACGCAGCATCCAGCAGAACATCCAGTACAAAAAGTGCCTGAAGAATGAAACTTGTACCATTATGAGGATCAACCGAAACCGGTGCCAGCAGTGCCGTTTCAAAAAGTGTCTGTCTGTGGGAATGTCCCGAGACGCTGTTCGTTTCGGCCGTATCCCAAAACGCGAGAAGCAGCGTATGCTGGCCGAGATGCAGAACGCCATGAACAACATGGTGAACAACCAGCTTCAGAATGAATTCCAGCTGGCGAGCATCACATCAAACACCCCCTGCTCTTCTTCTTCGTCCCCATCTACCACCTCATCTCCTTGCCCAGGCCTTACAGTGGGGCCGCAACCCCAGCCCCCCGCAGTGCCCCTAGCACCATCCCCATCCCCCCCGGCCCCAACATCCCCATCGGTGCAACCGGCTCAGAGCCCCCCACCTGTAACCTCTTCTCCAGCACCGTGCTCCAGCCCAGGAGTGGACAAAACCATCGCCGCCATAACCCGGGCACACCGCGAGACCTTCGTCTACGCCCATGATAAGTTAGGTCCAGCGCTGCTGCCTCACAACGGCGAGCTGGACAACCGAAGCATTAACCGCTGCATGGCTGGATACCACCTCAATGGCAACAACACCATCTTCCACCATGATAATAATGTCGCTCATCATTGTAACAACTTTGAGGTGCCAGCGGAAAATGGCCTCCATTTTCAAGCCTCCCAAGCACCTGGACAACATCAGCAGCACAATAACAATGACCAGCGATCTCCAAGCAGTAACCTCTACGGCGTCCACCATAGTCAGGAGTTAAACGGCAGCTCCCAGGGTCAGAACTGTCCATGGAAAAAACGCAAAGAGATTCTGCTGGCTTGTCCAATGAACATGCATCCTTACTCAGACCCCAACAAAACACCCCAGGAAATTTGGGAAGACTTCTCTCTTAGCTTCACCCCAGCGGTGCGAGAGGTGGTGGAGTTCGCCAAACACATCCCAGGGTTTAGCACTCTATCCCAAAACGACCAGGTCACTTTGCTGAAGGCTGGGACATTTGAGGTCCTCATGGTACGCTTCGCCTCTCTGTTTAATGTAAAAGAAAAGACTGTAACGTTCATCTCAGGCGCCACCTACAGATTGGAGGCCCTGAAAAGCATGGGCATGGGCGATTTGCTGGGAACCATGTTTGACTTCAGTGAAAAACTCAACGCATTAGAGCTCTCAGCAGAAGAACTGGGACTCTTCACTGCAGTGGTGCTGGTTTCTGCAGACCGTTCTGGCATTGAAAATGTGAATTCAGTGGAGATGCTTCAGGAAAGTCTAATCAGGGCTCTCCGAACCCTCGTCAGCAAGAGCGCCCCTTGCGACGCCTCCCGATTCACCAAGCTGCTCCTCAAACTTCCTGACCTGCGCACGCTGAATAACATGCACTCAGAGAAGCTGCTCTCTTTCCGCATTGATGCCTGAGGTTGCAAACCACTGCCATGAGAAGCCAGTTAAAGTGGGTCACCACTGAAAGACAAAAAAAAGGGTATGAACAGTAGAGCCCTTTCCAAAAGAACCAACCAGAAAACAAACTGATGCCTTTGGCACTTGAAAGCACTTGATGACACATTTGAAGGGATGCTTTGGTGCCTAATGGTTGGTCAGTAACCTTAATGGCTAGCTAACCATATAGGGCAGTGAAAAGGGTCTCTGAAACACATTTCATTGCTTACTTGAAATGGGTCGTAATAATGAAGCAGACAAAAACACTCACAATTGGACTGCATCTACATAGGGAACAAGTGCAAAAAGCCTCTTACAAGGAGTCGCAGCCAGGCCAGAAGGATCTCCAGGCCACTTCCAGAGAGGAGACGACCGCAGCAGAACATCAAGCGTCTCCTCATACCCAGGCCTGGGTTCCAGCTACACCCACACTCAGAGATTAAATGATCATTTTAGCTATGATGCAAATGACAAGATATACGTGGTATGAACCTTCATGCATATTCACATCCCTGTGACTTTGTAAAATATTTGTAAATATGATATACATACTTTAAATGTTTTAAAATGTATAATATATTTTTTGTAAAGTTCACATGCTCAACGCAAATGATATATAAATATACGAGCACAGATATATAAGTAGAGTGAATGCATATTATAGAACAACATTCAGACATGTATTTCAGGTGTCTTTTACTTCATAAAGCCATTTTATGAAACAAGAGTACAGTGTGTTGTCTTTTTTAACTTTTGTTAATTTCTGTTTATCTGTGTACTGAACATGTTTATTGTAAAAGAATTAAAAATTCATTATATATATATATATAATAAATAAAGTTGCTTTACAGCAGGGGTGTTCAAACTCGGTCCTTGAGGGCCACTGTCCCACAGAGTTTAGCTCCAACTTGCCTCAACACACCTGCATGGAAGTTTCTAGTATGCCCAGTAAGACCTTGATGAGCTGGTTCAGGTGTGTTTAATTGGGGTTGGAGCTGAACTCTGCAGGACAGTGGCCCTCCAGGAGCAGGATTGAACACCCCTGTTTTACAGTGTCAAGAGTAATAAGTAAAATATATAATTTCTGTCCTTAATAGTAAAGTTAAGGCTGTGTCCTCTAGTGGAAGCTAATAAA

Function

symbol description
nr1d1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Acts upstream of or within autophagy; circadian regulation of gene expression; and regulation of locomotor rhythm. Located in chromatin. Is expressed in nervous system. Orthologous to human NR1D1 (nuclear receptor subfamily 1 group D member 1).

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process

KEGG:

id description
K03728 NR1D1; nuclear receptor subfamily 1 group D member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01842093_01847705.mRNA True 3107 mRNA 0.48 8 1840937 1847705

Neighbor

gene id symbol gene type direction distance location
CI01000034_01785791_01788743 NA coding downstream 51122 1785235 ~ 1789815 (-)
CI01000034_01718736_01720031 HOXB13, HOXB13AB, HOXB13A, HOXB13AA coding downstream 120691 1718606 ~ 1720246 (-)
CI01000034_01703545_01705527 HOXB10A, HOXD10A, HOXA10 coding downstream 134894 1702892 ~ 1706043 (-)
CI01000034_01694301_01697568 HOXB9, HOXB9AB, HOXB9A coding downstream 142510 1694041 ~ 1698427 (-)
CI01000034_01684215_01687260 HOXB8AB, HOXB8, HOXB8A, HOXB8AA coding downstream 153677 1684177 ~ 1687260 (-)
CI01000034_01957876_01995623 NA coding upstream 110171 1957876 ~ 1995816 (-)
CI01000034_02010544_02026521 NA coding upstream 162437 2010142 ~ 2026725 (-)
CI01000034_02092229_02092596 GNGT2, GNGT2A coding upstream 244254 2091959 ~ 2092642 (-)
CI01000034_02098976_02103261 NA coding upstream 249898 2097603 ~ 2103261 (-)
CI01000034_02110958_02136112 NA coding upstream 263241 2110946 ~ 2136112 (-)
G171751 NA non-coding downstream 10310 1827596 ~ 1830627 (-)
G171731 NA non-coding downstream 59881 1780846 ~ 1781056 (-)
G171724 NA non-coding downstream 72859 1764501 ~ 1768078 (-)
G171712 NA non-coding downstream 99797 1740644 ~ 1741140 (-)
G171704 NA non-coding downstream 129980 1710678 ~ 1710957 (-)
G171785 NA non-coding upstream 6328 1854033 ~ 1855451 (-)
G171759 NA non-coding upstream 12877 1860582 ~ 1861091 (-)
G171743 NA non-coding upstream 102437 1950142 ~ 1952366 (-)
G171748 NA non-coding upstream 104753 1952458 ~ 1952778 (-)
G171745 NA non-coding upstream 105205 1952910 ~ 1953364 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 522683 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 763715 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1256654 571856 ~ 577775 (-)
G171229 NA other downstream 1573691 229404 ~ 267246 (-)
G171755 NA other upstream 16413 1864118 ~ 1866373 (-)
G171835 NA other upstream 594116 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 662108 2510061 ~ 2511521 (-)
G172016 NA other upstream 1387258 3234963 ~ 3236615 (-)
G172151 NA other upstream 1543808 3391144 ~ 3451802 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025297 nr1d1 coding NC_007114.7 CM002887.2 23488652 ~ 23496223 (+)
bowfin (Amia calva) AMCG00016688 nr1d1,LOC102302421 coding CM030122.1 CM030122.1 27509645 ~ 27516973 (-)