CI01000034_01858418_01860499


Basic Information

Item Value
gene id CI01000034_01858418_01860499
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1858418 ~ 1861085 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01858418_01860499.mRNA
TGTGTTTACTGTCAGCCCCTGTGTTTTCTGAATCGGGGTCACATTCGCTATGGGTCTTTGCTACATTTTTGACTGGAGACAGTTCAATCCCATTCCCAGAGTTCACTGCCATTATTATGCTGGATGATATTGTCATCGGTCACTATAATGCAGATGAGAGAAGTTTTGTCCCGGCGACAGCACAAGAATCTGTTAATGTCACAGAGCAAATGACTATATCAACCGTCTGTAAAGGCATTCACGAGGGCATGAAAACCAAAGCATACTACTTGATTGATCATTTAAATTATACAAGAGGCCTTCATGTGCAGCAGAGGCTGGTTGGATGCGAACTTCTCCATGATGAGCCTGGCCAAATGATGACATTGGAGGCCTTTAATGGCGAGAGTGGCTTTGAACGACACTATAACGTTCAGGGAGACCAACGCACTCATTGGAAATGGCCTGTCATAAAGAGTAGAGCACAGCTGGAGTATGATGCATGGCTATATGCCCACTTTTACCGCCCTTTGTGCATTAGCCAGCTTAGGAAATATCTAAAAAAGGAGAAAAAGCGTGTGATGGCAAGAGTAAAGCCCAGAGTGAGAGTGATTAAACGCTTTTATAGTGAGACAGATGTAGTTCAGATGACCTGCTTGGCAACTGGTTTTTACCCACGTCACATTAATCTGACCCTGCTTCAAGACGGCCAGCCAGTTAATGAGGAGAGGGTCACGGGAGGAGAACTGCTGCCCAATGCTGATGGAACATACCAGATGAGGAAGAGTGTGGAACTCACTTCCAAAGAGCAAAGAGAAAGGCACACCTACACATGTACTGTGACTCACCTTGGCCTGGATAACAAACTTGACATCAGTATAGGTATTAAATTGATAGGGCAAGCTTATATTTAATACTGTATATATACAGTCATGCTCAAAAGTTTACATACCCCTTGCAGAATGCATAAATGTATTCCTATTTCTATATTGCAGGCCAGCTACATACCTGCTGCTTCAGAGCTACCGCAGATGTGACGTCTGAAGAGGCACAACATTTACAGACTGGACACATTTTGTATTTATAAACTGATTGACCTGAAAGAAATTTTTTTTAATAAGTATTAAAAAAAAAACAAAAAAAAACTAAACTCTGTTAGCATCCAGAGAAGAGCACTGATTAAATATTATAAGAAAATAAGACTTTTATTTTAAGAGAATGTTTTAATTACATTTATTTTCTTACCAGGTTGGCAAGTTTTTTTTTTTTTTCTTGTTTTAAGAAAAAATATTTCCAGTTGTCTTATCACACCCAGATTTTGTCTGATACAGTATTGAATATTTCAGTATTTTTACAATATTTGTAAGTTTCACAAAAGTATGTGTGATGTCAGAATGCATTGCCAGCAAATCAGCCACCAGAACTAGGCTGGTATTTATTTAATCAGGTACTGTATATTTATGTATTTTTAAGACAGTTTGAACTATTAATATTGAGCTA
>TU192697
GCAGGCCAGCTACATACCTGCTGCTTCAGAGCTACCGCAGATGTGACGTCTGAAGAGGCACAACATTTACAGACTGGACACATTTTGTATTTATAAACTGATTGACCTGAAAGAAATTTTTTTTAATAAGTATTAAAAAAAAAACAAAAAAAAACTAAACTCTGTTAGCATCCAGAGAAGAGCACTGATTAAATATTATAAGAAAATAAGACTTTTATTTTAAGAGAATGTTTTAATTACATTTATTTTCTTACCAGGTTGGCAAGTTTTTTTTTTTTTTCTTGTTTTAAGAAAAAATATTTCCAGTTGTCTTATCACACCCAGATTTTGTCTGATACAGTATTGAATATTTCAGTATTTTTACAATATTTGTAAGTTTCACAAAAGTATGTGTGATGTCAGAATGCATTGCCAGCAAATCAGCCACCAGAACTAGGCTGGTATTTATTTAATCAGGTACTGTATATTTATGTATTTTTAAGACAGTTTGAACTATTAATATTGAGC

Function

NR:

description
nonclassical MHC class I antigen

GO:

id name namespace
GO:0019882 antigen processing and presentation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01858418_01860499.mRNA False 1479 mRNA 0.39 4 1858418 1861085
TU192697 True 507 lncRNA 0.30 1 1860577 1861083

Neighbor

gene id symbol gene type direction distance location
CI01000034_01811735_01836960 IGF2BP1 coding upstream 21458 1811467 ~ 1836960 (+)
CI01000034_01769963_01776287 UBE2Z coding upstream 81698 1767975 ~ 1776720 (+)
CI01000034_01764505_01767882 ATP5G1, ATP5G3 coding upstream 90496 1764505 ~ 1767922 (+)
CI01000034_01729413_01730790 EVE1 coding upstream 127239 1729413 ~ 1731179 (+)
CI01000034_01657515_01658817 NA coding upstream 199312 1657210 ~ 1659106 (+)
CI01000034_01862099_01867869 NA coding downstream 1014 1862099 ~ 1867869 (+)
CI01000034_01872601_01880795 CASC3 coding downstream 11516 1872601 ~ 1880795 (+)
CI01000034_01900645_01947187 RAPGEFL1 coding downstream 39560 1900645 ~ 1947187 (+)
CI01000034_02231423_02231755 NA coding downstream 370218 2231303 ~ 2232124 (+)
CI01000034_02256162_02260170 NA coding downstream 394680 2255765 ~ 2260464 (+)
G169611 NA non-coding upstream 27527 1827583 ~ 1830891 (+)
G169477 NA non-coding upstream 166348 1691030 ~ 1692070 (+)
G169482 NA non-coding upstream 180772 1676497 ~ 1677646 (+)
G169578 NA non-coding upstream 239043 1619099 ~ 1619375 (+)
G169577 NA non-coding upstream 240380 1617759 ~ 1618038 (+)
G169620 NA non-coding downstream 33395 1894480 ~ 1910064 (+)
G169606 NA non-coding downstream 89345 1950430 ~ 1952366 (+)
G169616 NA non-coding downstream 91410 1952495 ~ 1952784 (+)
G169612 NA non-coding downstream 91824 1952909 ~ 1953359 (+)
G169636 NA non-coding downstream 122712 1983797 ~ 1984917 (+)
G169340 NA other upstream 547540 1250219 ~ 1310878 (+)
G169394 NA other upstream 664858 1150297 ~ 1193560 (+)
G169357 NA other upstream 739399 1053543 ~ 1119019 (+)
G169309 NA other upstream 888497 969261 ~ 969921 (+)
G169806 NA other downstream 456888 2317973 ~ 2337690 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other downstream 1573051 3432846 ~ 3438839 (+)
CI01000034_04125435_04125780 RPRML other downstream 2264015 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 2333553 4192311 ~ 4200636 (+)

Expression


Co-expression Network