CI01000034_01872601_01880795 (CASC3)


Basic Information

Item Value
gene id CI01000034_01872601_01880795
gene name CASC3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1872601 ~ 1880795 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01872601_01880795.mRNA
GGAGGAGAGGATGAGGAGGAAGTAGAGCATTTCAGTGATGACGAGGCCTCACGTCCTGCAGCAGAACCGAAGCCCGCTGCAGATGCCCCGACAGAAGAGCTTGGTGAAGTGGAGGAGAGAGATGAAGAAGTCAAGGAGGTTAAAACAGATGAGAAGGGGAATCTAGCCGGGGAGCGACAGAGTGGAGATGGACAGGAGAGCACAGAGGACCCTGAGAATAAATCGGGAAGTAAAGGCCAGAAGCTGGATGATGATGAGGACAGGAAGAATCCAGCATACATCCCCCGAAAAGGCCTTTTCTTTGAGCATGACGTGAGAGGCCAGGCTACAGAGGAGGAGAGGCCTAAAGGCAGACACAGGAAGTTGTGGAAGGACGAGGGCCGATGGGAACACGACAAGTTCCGTGAAGAGGAGCAGGCGCCAAAGTCCCGCGAAGAGCTTATTGCTCTTTACGGTTATGACATCCGCAACGGCACAGGGCCGAGTGACGGACGATCGTACCGCTCCCGAAAACCCAGATATGCTGGTTCACCCAGTCGGGAGCCTAGGCGCCACCGTGATGGAGATAAGCCTGTGCGTACAACATGGCAGGGGCCTCCACCTGGCCACCGCAATGCCTCTCAGTCTGTTACCCTACAGTCAGGACCTCCTCCTGCTCCCCCTGCAGTACCCAAACCCTCCGGGCGACCCTTGACTCAACCTCCACAGCGCAGCTTCCAGGGCAGTCGAGCCTCGTCGGCCCCCCACAGGACAGAAGGTCGAGGGCACCTGAAGCCCAGTCTAGATGGCCCGCCACCTCGAGGTGTGCGGCCACAGCCTGGGGAAGGTGAAAGGGGCCCAAGGCTCAGGGGCCGTGGCTCTCATGCTGTTCATGCTGACCGTAGCCCAGCTGTGGTGGTGGAGGACATCCGCAGCGAGGAAGAAGAGGAAGAGGGTGAGATTCCAACAGCCACGACTACATACACTGCTCACCACTACAAGACGGAGAGAGAACGGGTTCCGTCACCACGAAAGCAAGATCCGGGCCCAGCGATGGAAGGGGGCAGTGCAGCTGGTCAGATGAGAGAATCATCTCCGCCTCAAGAGAGGACGGTGGAGAAGAAATCGTACTCGCTTGCGCGGAGGGCGACTCGAACGCGAACGTCTGATCTCGGTAAGCAGGCGTCGTTAGATGACTCTTCGCCTGCAGTCCAGCAAACCCCAGCGGCAGCAAAGAGCGAGTCATGGCAAGAGCATAGTGATGCAGGAACACAAGGAGGACTAACAGGGCTCGACCAGGACCTGGCCCGCCTCAGTCTGGCGGGGCAAAACTGGGCCCAGAGCCCACCCTCCTACCTGCAGGCTGAGATGAGAGGCATCCGTAGTTCCATGCACATAGCAGGAGGCCCTCCACAGTATGGAAACATGGAGGATATGAGTGTTGGTGGTGGCCGAGCTAAGCGGTATTCATCACAGCGCCAGAGGCCAGTTCCTGAGCCTGCGCCCATGCACATAGGAGTCATGGAGGGCCATTATTATGAACCCATGTCTTTCCAGGGACCAATCTACACGCATGGGGAAAGTCCAGCAGCCTTGCCCCCTCAGGGCATGCTTGTTCAACCTGAGATGCACCTGCCACACCCCACCCACCCCGGACACCCAGGCTTGCATCCGCACCAGTCAGGAGGGCCCATGCCCAATCCTGCTCTTTACGCCGCTCCACCCGTTTCTTTGTCACCTGGGCAACCGCCTCCACAGCAGCTGCTACCCCCACCCTTCTACCCTCCACCAGGTGTCATGACCTTTGGGAACACCAACTACCCGTACCCAGCTGGAGCTACGCTACCTCCAATGTACCCCAACCCCCAGGCACAGTCACAGGTCTACGGTGGTGTGACGTACTACGACACGGTACAGCAGCAAGCTCAACCCAAACGCTCCCCGCCCCGACGTTCCTCTCATCCCGTTACAGTCAGACCTCCCCCTCCTGAG

Function

symbol description
casc3 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome and exon-exon junction complex. Orthologous to human CASC3 (CASC3 exon junction complex subunit).

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process

KEGG:

id description
K14323 CASC3, MLN51; protein CASC3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01872601_01880795.mRNA True 1971 mRNA 0.59 9 1872601 1880795

Neighbor

gene id symbol gene type direction distance location
CI01000034_01862099_01867869 NA coding upstream 4732 1862099 ~ 1867869 (+)
CI01000034_01858418_01860499 NA coding upstream 11516 1858418 ~ 1861085 (+)
CI01000034_01811735_01836960 IGF2BP1 coding upstream 35641 1811467 ~ 1836960 (+)
CI01000034_01769963_01776287 UBE2Z coding upstream 95881 1767975 ~ 1776720 (+)
CI01000034_01764505_01767882 ATP5G1, ATP5G3 coding upstream 104679 1764505 ~ 1767922 (+)
CI01000034_01900645_01947187 RAPGEFL1 coding downstream 19850 1900645 ~ 1947187 (+)
CI01000034_02231423_02231755 NA coding downstream 350508 2231303 ~ 2232124 (+)
CI01000034_02256162_02260170 NA coding downstream 374970 2255765 ~ 2260464 (+)
CI01000034_02275470_02281951 CYB561 coding downstream 393806 2274601 ~ 2282604 (+)
CI01000034_02421189_02423360 NA coding downstream 540231 2421026 ~ 2423527 (+)
G169611 NA non-coding upstream 41710 1827583 ~ 1830891 (+)
G169477 NA non-coding upstream 180531 1691030 ~ 1692070 (+)
G169482 NA non-coding upstream 194955 1676497 ~ 1677646 (+)
G169578 NA non-coding upstream 253226 1619099 ~ 1619375 (+)
G169620 NA non-coding downstream 13685 1894480 ~ 1910064 (+)
G169606 NA non-coding downstream 69635 1950430 ~ 1952366 (+)
G169616 NA non-coding downstream 71700 1952495 ~ 1952784 (+)
G169612 NA non-coding downstream 72114 1952909 ~ 1953359 (+)
G169636 NA non-coding downstream 103002 1983797 ~ 1984917 (+)
CI01000034_01729413_01730790 EVE1 other upstream 141424 1729413 ~ 1731179 (+)
G169340 NA other upstream 561723 1250219 ~ 1310878 (+)
G169394 NA other upstream 679041 1150297 ~ 1193560 (+)
G169357 NA other upstream 753582 1053543 ~ 1119019 (+)
G169309 NA other upstream 902680 969261 ~ 969921 (+)
G169806 NA other downstream 437178 2317973 ~ 2337690 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other downstream 1553341 3432846 ~ 3438839 (+)
CI01000034_04125435_04125780 RPRML other downstream 2244305 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 2313843 4192311 ~ 4200636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location