CI01000034_01957876_01995623


Basic Information

Item Value
gene id CI01000034_01957876_01995623
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1957876 ~ 1995816 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01957876_01995623.mRNA
ACCTTTTATAGATTTATATTTCTGATAAAATTTCATTTATTTTTGTCTTATTCATACTTTCTTCTTTTCTCTGTTTTGCGGCTGCTAATATGGATTGATCCTGATGGCTGCCACTTCTTATTCATTCAATAAGGAGGAAAAGCAGAGGGCTATGCTGTTTCTGCTTGTCTTTACTGCTGTTTGATTAACCATGATGAAGACTGAACCCCCATCTGCAGCCAGCGGCAGCACTAGCACCACCCTTGTAGCAAGAAGTGCATCGCCGCACAGGAATGCCTATGAGGCTGGAATTCAATCCCTCAAGCCAGTAAAAGATTCCAGTGCTGCTAACGGGGAGGATGGGAAACCTCGACCACAGGGCCGGGGCCGCAGGTACGGCTCCAATGTGCACCGCATCAAGAACATGTTCATGCAGATGGGTTCTCCCGGGGATGAAGAGGATCCGTCGAAGGCCAAAGCCCAAGACCAGACGATCCGACTGTCCCTTCCCAGAGCAAGCAGTCTGAATGAGAATGTGGATCACAGTGCACTCCTCAAACTCGGCGGGACTGTGTCAGAGCGGGTTAGCCGCTTCGACGGAAAGACTGATGGTAGCGGCTCCCGTGGATCATCCACAGGCTACTCCAAGCTTCAGGAGACACGAAAGATATTTGAACAACGTCACATGCAGGAGAAGCAGGCAGCAACTAATCGAATACTGCTAAAGAAAGAGCGAGCGTCAGGGTTCCAAGATGGCCGTCTGGACGTGGTGGTTCGCTTCAACGGCAGCACCGAGTCATTAGACAGGTTGGATGCAGGGGACTGTCCCACAGATGCAGTGTCCCCTACGGTCAGCCAGCTGAGCGCAGTATTTGAAAGAGCAGACCAGCGTAACAACCTTTACCGACCATCCTCAACCTCCCCACAGCCTTCTCAAGGGGCAGGCTCTACCCCGGCCAAGGTCGGAGAAATCAACTCCATAGTCACCACCAGAAAGGCACGAGCCTTCTCTGCAACAGAAAATCAAGAGGAGGGAGCTCAGTGCAAAGACCAAGAAGGTGCACCTGGGAGTCCGAAGAGCAGAACAAGCATCCAACCTGATGGACCCAATAGCGAACCCTCCAAGGATGTGGCTCCTGGCAGCGCTGACTCAGCTTTCGATACGTCCAGGTCAGAGGAGATCCAGAATGCATCAAGCAATGACTCCAAACCAGGGGAGCATGCCGCACCAAGTGCACCGGATGCAGGGAGCAGACTGGTACAGGCGGATGTCCACGCCTCTCTGGAAAATGGGGAGGCCACCAGCAGCCATGAGCCCTCAGAACAAAGGGAGGAAATTGGACAGGCCTGTGCTGAGGAGGAATCCCACAGAGAGGATATCTCAGAAGCAGATCTGGTGGACATCAGCGCGTACAGCGGGATTGGAGAGGACTCTGGTGGTAGTCAGCTGGACGAAGATGAGGAGGCTGAGAATGATGATGCTTACGAACCAGAATCCAGCTGTTCAGAAGTCCCTGGCTTGCCTGTAGAAGATGAACCACCTCCCAGCAGGAAGATTCGTTTCAGTACAAACCCCATCAAGACAATGGCACAATCACATGATGACCAACGCTATCAGAGCGCCATCGCTTCAAACTGTTCATATGCTCAACAAAGGGCTAAGTTGTGTTTTGAGCTTTTAAACATGCAACCGCTACCAAAAAGGTACTTTGCCCTGCAGTGGCCTGTAGTCAGTTATTTTTGCTCCTGGGGAGAGATGGACTGGCTACAAGAGGAGGTTTTCACCACATACTCGAATGAGGACTACGACAGACGCAATGATGAGGTTGACCCCATGGCGGCTTCGGCCGAATATGAGCTGGAGAAGAGGGTGGAGAGATTGGACCTATTCCCCGTCGAGCTGGAAAAAGATAAAGACGGATTGGGAATCAGCATTATTGGGATGGGTGCCGGCGCAGACATGGGCCTAGAAAAACTTGGAATCTTCGTCAAGACGGTGACTGAAGGAGGAGCCGCCCACCGAGACGGAAGGATCCAGGTGAATGACTTGATTGTGGAGGTGGACGGAACCAGTCTGGTGGGCGTGACACAGAATTTCGCTGCATCTGTCCTCAGGAACACCAGCGGCACTGTCAAGTTTGTGATTGGCAGAGAGAAGCCGGGGGAACAGAGTGAGGTGGCCCAGCTGATCCAGCAGACACTGGAACAAGAGAGATGGCAGAGAGAAATGATGGAGCAACGCTACAACCCCTACATGGAAGAGGACGAAGAGACAGGTGAATATGCCACAGATGAAGAAGAAGAGATGAGCCCCATGTTTCCTAATGCCATCGAGGTGTTTGACCTGGCAGAGAATGAAGACATGCTTTCTCCTGTGGAGATGGACCCAGAGAAACTTGCTCACAAGTTTAAGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01957876_01995623.mRNA True 2395 mRNA 0.52 8 1957876 1995816

Neighbor

gene id symbol gene type direction distance location
CI01000034_01842093_01847705 NR1D1 coding downstream 110171 1840937 ~ 1847705 (-)
CI01000034_01785791_01788743 NA coding downstream 168061 1785235 ~ 1789815 (-)
CI01000034_01718736_01720031 HOXB13, HOXB13AB, HOXB13A, HOXB13AA coding downstream 237630 1718606 ~ 1720246 (-)
CI01000034_01703545_01705527 HOXB10A, HOXD10A, HOXA10 coding downstream 251833 1702892 ~ 1706043 (-)
CI01000034_01694301_01697568 HOXB9, HOXB9AB, HOXB9A coding downstream 259449 1694041 ~ 1698427 (-)
CI01000034_02010544_02026521 NA coding upstream 14326 2010142 ~ 2026725 (-)
CI01000034_02092229_02092596 GNGT2, GNGT2A coding upstream 96143 2091959 ~ 2092642 (-)
CI01000034_02098976_02103261 NA coding upstream 101787 2097603 ~ 2103261 (-)
CI01000034_02110958_02136112 NA coding upstream 115130 2110946 ~ 2136112 (-)
CI01000034_02154099_02162106 NAGS coding upstream 156779 2152595 ~ 2162106 (-)
G171745 NA non-coding downstream 4512 1952910 ~ 1953364 (-)
G171748 NA non-coding downstream 5098 1952458 ~ 1952778 (-)
G171743 NA non-coding downstream 5510 1950142 ~ 1952366 (-)
G171759 NA non-coding downstream 96785 1860582 ~ 1861091 (-)
G171785 NA non-coding downstream 102425 1854033 ~ 1855451 (-)
G171860 NA non-coding upstream 78880 2074696 ~ 2074906 (-)
G171867 NA non-coding upstream 100034 2095850 ~ 2096308 (-)
G171849 NA non-coding upstream 167451 2163267 ~ 2165434 (-)
G171841 NA non-coding upstream 407277 2403093 ~ 2428544 (-)
G171890 NA non-coding upstream 547347 2543163 ~ 2543769 (-)
G171755 NA other downstream 91503 1864118 ~ 1866373 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 639622 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 880654 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1373593 571856 ~ 577775 (-)
G171229 NA other downstream 1690630 229404 ~ 267246 (-)
G171835 NA other upstream 446005 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 513997 2510061 ~ 2511521 (-)
G172016 NA other upstream 1239147 3234963 ~ 3236615 (-)
G172151 NA other upstream 1395697 3391144 ~ 3451802 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 2170683 4165373 ~ 4172272 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025295 ppp1r9ba coding NC_007114.7 CM002887.2 23247325 ~ 23348084 (+)