CI01000034_02092229_02092596 (GNGT2, GNGT2A)


Basic Information

Item Value
gene id CI01000034_02092229_02092596
gene name GNGT2, GNGT2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2091959 ~ 2092642 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_02092229_02092596.mRNA
ATAGATTTAACATTTGACCGTGTAACTTTTTTTTGCTCAGGGCAAGATGGCGCGGGATATGTCTGATAAGGAGATCCTGAAAATGGAGCTGGAACAACTTCAGAAGGAGGTTAAGAACACTAGAGAGCCAGTTTCTAAAACCGCAAAGGAGATTTGTGAATGGGTTGAGGCCCAAGCCGCAGAAGATCCTCTCATAAAAGGAGTTCCTGAGGACAAAAACCCCTTCAAGGATAAGGGTGGATGCATAATAACGTAGCCCATGTGATTTCTTTTGGCAAAAGTATACGAGGATGTGTTCATTTGTGCTAATGAGAGCTGTTTAGCAGTCAGTTATCTGAACTTAAATGAGGAGTAAGCACATTGTGCTAAGCTTTAGCATCTCTACTAGACGCCATAGAGACTGCAAGATTTGAACAAATACTTGACCGTACAGTGTCAAAAAGGATTGGTTTTGGATGTGTGTATCTCTTCTTGTACTTATTATTAAGGATGGCAGCCCTCTTGAAGCAAACTCTTTGTAAATAAA

Function

symbol description
gngt2a Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in myotome; pineal complex; visual system; and yolk syncytial layer. Orthologous to human GNGT2 (G protein subunit gamma transducin 2).
gngt2 Enables GTPase activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Part of heterotrimeric G-protein complex.

GO:

id name namespace
GO:0005834 heterotrimeric G-protein complex cellular_component

KEGG:

id description
K04549 GNGT2; guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_02092229_02092596.mRNA True 526 mRNA 0.41 2 2091959 2092642

Neighbor

gene id symbol gene type direction distance location
CI01000034_02010544_02026521 NA coding downstream 65234 2010142 ~ 2026725 (-)
CI01000034_01957876_01995623 NA coding downstream 96143 1957876 ~ 1995816 (-)
CI01000034_01842093_01847705 NR1D1 coding downstream 244254 1840937 ~ 1847705 (-)
CI01000034_01785791_01788743 NA coding downstream 302144 1785235 ~ 1789815 (-)
CI01000034_01718736_01720031 HOXB13, HOXB13AB, HOXB13A, HOXB13AA coding downstream 371713 1718606 ~ 1720246 (-)
CI01000034_02098976_02103261 NA coding upstream 4961 2097603 ~ 2103261 (-)
CI01000034_02110958_02136112 NA coding upstream 18304 2110946 ~ 2136112 (-)
CI01000034_02154099_02162106 NAGS coding upstream 59953 2152595 ~ 2162106 (-)
CI01000034_02166509_02170478 NA coding upstream 73359 2166001 ~ 2170478 (-)
CI01000034_02171666_02177554 LSM12A, LSM12 coding upstream 78962 2171604 ~ 2178398 (-)
G171860 NA non-coding downstream 17053 2074696 ~ 2074906 (-)
G171815 NA non-coding downstream 130310 1959454 ~ 1961649 (-)
G171745 NA non-coding downstream 138595 1952910 ~ 1953364 (-)
G171748 NA non-coding downstream 139181 1952458 ~ 1952778 (-)
G171743 NA non-coding downstream 139593 1950142 ~ 1952366 (-)
G171867 NA non-coding upstream 3208 2095850 ~ 2096308 (-)
G171849 NA non-coding upstream 70625 2163267 ~ 2165434 (-)
G171841 NA non-coding upstream 310451 2403093 ~ 2428544 (-)
G171890 NA non-coding upstream 450521 2543163 ~ 2543769 (-)
G171907 NA non-coding upstream 496902 2589544 ~ 2589761 (-)
G171755 NA other downstream 225586 1864118 ~ 1866373 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 773705 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 1014737 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1507676 571856 ~ 577775 (-)
G171229 NA other downstream 1824713 229404 ~ 267246 (-)
G171835 NA other upstream 349179 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 417171 2510061 ~ 2511521 (-)
G172016 NA other upstream 1142321 3234963 ~ 3236615 (-)
G172151 NA other upstream 1298871 3391144 ~ 3451802 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 2073857 4165373 ~ 4172272 (-)

Expression


Co-expression Network