CI01000034_02110958_02136112


Basic Information

Item Value
gene id CI01000034_02110958_02136112
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2110946 ~ 2136112 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_02110958_02136112.mRNA
ATGGACTCGATTATACTTGCCCAAGCCAACTCACCCCTCCAGTACCCCACCCAGGGTTTCGTAGTGCCACCTCTTACAAAAAGATTGATACCAGGTTTGGCTCTGTATGCACAAAGAAGACAACTATATAAGGTGTCTTTGAGTGTAAAGAGTGGAGTGCTCTCAGTGGAGGATGTTCTGGATGAACAGCAGGTGGATGGACAGGGTCAGAGTGAACTGAGCATCTTATCCAGCGACCTCACACAACTCAATGATCTGCTGTCCAGAGTGACATACACCAGCACCATCTACCATGTGAAGACTAAAGATCAGGTTCATTTTTCTTTTGAGGACCACAAGGCCATATTTCCCATTGTGATCAAGAGACCCTCAGTTCCCGTTTTATATGACCCAGGAACAGATATTAACTCACAAGTAACCATAACAACCAAGACCTTTTTGAGATATGAAGAGCTGAACATCCTCATCAACAGTATCCGACAGCTTTACCCCAAAATCAAGATCATCATAGCAGATGACAGCCTGACGCCAGAAAATGTGACTGGCAGCAACATAGAGCACTATATCATGCCTCCTGCACAGGGCTGGTTTGCAGGCAGGAATCTGGCTATTTCTCAAGTCACCACTAAATACTTCTTGTGGGTTGATGATGATTACATATTCAATAATGATACACGGATTGAAAGCTTTGTGGAGATAATGGAGAAAGTTCCAGAACTGGATGTGGTTGGTGGTGCAGTGGGAAGAAATCAGTTCTATTTCCGGCTTCAGTATGATGAAGGGGATGAAGAGGAGGGCGGTTGTCTCAGACGTTTTCATAGTAAGCACTACCAAACAGTCCCAGGCTTTAAAGGCTGCTTCTTTGTAGACGGGGTCGTCAACTACTTCCTCGCACGGACAGATGCAGTGCGACGGGTTGGCTTTGATCCGTTTCTGAAGAGGGTGGCTCACACTGAGTTTTTTCTTGATGGTCTCGGAGATTTGCTGATTGCCTCTTGTAAAGGACTTACAGTTGGCCACCAGAAGAAACGCAAACAAAGCAAATACAGACACTTTAGGTTTCCAGGACGAAATGATGGAAAAAACAAAATGGCCCATCATTACTTCAAGAATTATATGAAATGCATCAGCCCTCACCCTGTTTTCATCAAACCAAAGATGGGGACAAACTTGAACAGTCTTATTCTTGCACCAGCCAACTCTCCGCTCCAATATCCAATCACAGGTTTCACAATCCCTCCAATGAAAAAATCTGTAATACCAGCACAAAAGAGGCAGGTGTACAAGGTGTCTTTGAGTGTAAAGAGTGGAGTGCTCTCAGTGGAGGATGTTCTGGATGAACAGCAGGTGGATGGACAGGGTCAGAGTGAACTGAGCATCTCATCCAGCAACCTCACACAACTCAATGATCTGCTGTCCAGAGTGACATACACCAGCACCATCTACCATGTCAGAACATCAGACCTGGTTCATTTCTCTTTTGAGGAACATGAGGCCATATTTCCCATCATGATTAGGAGACCAATAGTTCCTGTTCTTTATGACCCAGGAAACGATATCAACTCGCAAGTAACCATAATAACCAAGACATTTCTGAGGTATAAGGAGCTGAAAGTCCTCATCCAGAGTATCCGGAAGTTTTACCCAAATATCAAGATCATTATTGCAGATGACAGCCTGAAGCCTGAGAAGGTGTCTGGAAACAACATAGAGCACTACATCATGCCTCCTGCACAGGGCTGGTTTGCAGGCAGGAATCTGGCTGTGTCACAAGTCACCACCAAATACTTCCTGTGGGTTGATGATGACTTTGTATTTTTGAATGGGACCCGGATTGAGAGCTTTGTAGAGATTATGGAGGCAGTTCCAGAACTGGATATCCTTGGTGGTGAGGTATCAGGTGATCAGTATTATTTCAGTTTTGAGTATGAAGAGGGAGATGAAGTGGATGGCGGCTGCCTAAGACGTGTTAAAAAAGTATTTCATCAGCCACTTCCGTACTTCGATGACTGCTTTCTAGTAGATGGAGTTGTAAATTATTTTTTGGGTCGGACGGATGCAGTGAGAAGGGTTGGCTTTGACCCGTTCCTGAAAAGAGTGGGTCACTCTGACTTTTTCCACAGAAAAATGATTGAGATGATTGTTGGCTACAAGTTGCATGCTGAGGTCTGCAGCGTCACTGTGTCTGTATTGTTACATAAATAATAGATGAATAAA

Function

NR:

description
LOC557782 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_02110958_02136112.mRNA True 2217 mRNA 0.44 17 2110946 2136112

Neighbor

gene id symbol gene type direction distance location
CI01000034_02098976_02103261 NA coding downstream 7685 2097603 ~ 2103261 (-)
CI01000034_02092229_02092596 GNGT2, GNGT2A coding downstream 18304 2091959 ~ 2092642 (-)
CI01000034_02010544_02026521 NA coding downstream 84221 2010142 ~ 2026725 (-)
CI01000034_01957876_01995623 NA coding downstream 115130 1957876 ~ 1995816 (-)
CI01000034_01842093_01847705 NR1D1 coding downstream 263241 1840937 ~ 1847705 (-)
CI01000034_02154099_02162106 NAGS coding upstream 16483 2152595 ~ 2162106 (-)
CI01000034_02166509_02170478 NA coding upstream 29889 2166001 ~ 2170478 (-)
CI01000034_02171666_02177554 LSM12A, LSM12 coding upstream 35492 2171604 ~ 2178398 (-)
CI01000034_02182977_02213069 HDAC5 coding upstream 46852 2182964 ~ 2213069 (-)
CI01000034_02295276_02337198 TANC2A, TANC2 coding upstream 159164 2295276 ~ 2337198 (-)
G171867 NA non-coding downstream 14638 2095850 ~ 2096308 (-)
G171860 NA non-coding downstream 36040 2074696 ~ 2074906 (-)
G171815 NA non-coding downstream 149297 1959454 ~ 1961649 (-)
G171745 NA non-coding downstream 157582 1952910 ~ 1953364 (-)
G171748 NA non-coding downstream 158168 1952458 ~ 1952778 (-)
G171849 NA non-coding upstream 27155 2163267 ~ 2165434 (-)
G171841 NA non-coding upstream 266981 2403093 ~ 2428544 (-)
G171890 NA non-coding upstream 407051 2543163 ~ 2543769 (-)
G171907 NA non-coding upstream 453432 2589544 ~ 2589761 (-)
G171937 NA non-coding upstream 534044 2670156 ~ 2670385 (-)
G171755 NA other downstream 244573 1864118 ~ 1866373 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 792692 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 1033724 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1526663 571856 ~ 577775 (-)
G171229 NA other downstream 1843700 229404 ~ 267246 (-)
G171835 NA other upstream 305709 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 373701 2510061 ~ 2511521 (-)
G172016 NA other upstream 1098851 3234963 ~ 3236615 (-)
G172151 NA other upstream 1255401 3391144 ~ 3451802 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 2030387 4165373 ~ 4172272 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008873 NA coding CM030126.1 CM030126.1 13585087 ~ 13608948 (-)