CI01000034_03214677_03229150 (SYNGR1, SYNGR1A)


Basic Information

Item Value
gene id CI01000034_03214677_03229150
gene name SYNGR1, SYNGR1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3214215 ~ 3229868 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_03214677_03229150.mRNA
ACATAAAAGCATTTGGTGACTGAACTTGGAGCAGTTTGCGGTTCATCCCTATCCTTATTTTTTGGTTTTAATGAACATAAACTAAATAAATATTTTTATTAAATATTGTGTCTACACATGACTAAGCATTTGTCCTTTGGGTGGGAGCTATGAGCAGTCACTAGGTGGCACAACGTTACAAGGAATTGTAATTTTAAAATTCCATATAGTGGTCTTCGATTGGTTCCCATAATTTTGGGAATATTTATGTTTACACATTTTACGTTTTCCAAAGTAATCTACTCGTGATTCAAATGTATTTCTGTCACATAAACAGAGAGTAACTACTGAGCGTCTGGCGGGCACCTGGTCGGCAGCGCGCCTAAGTATCCTCGAGAGTGCGCATCAAGCTTGACAGCATAATGCGCGCTCTCGTGTTCCCCCGGATGCGTGTTTACTCAGTCTCCTCTCTCCACCCTTGAAATGAGAGAGGTACGGAGTGGAAGGACATCGTTTTACAAGAAAACGGGCAGCCAAGATCGAGACCGGTCGACAGACGAGAGTGAAGCTCGAAGAGTCAAGACACGGAGAAATCACGAACCTCTGAGGATGGAGCAGGCATACGGGGCTGGCAAGGCTGGCGGCACCTTCGATCCAATTACGTTCTTTCAGCAACCGCAGACTATTCTTCGAATAGTGTCATGGATCTTTTCCATCGTGATCTTTGGTTGCATTGCTAACGAGGGCTATGTGAACCGTCCAGATGAGGTAGAGGAATTTTGCATCTTTAACCGCAACCAGAACGCCTGTAACTATGCCGTTGGGATGGGATCCCTGGCCTTCCTCTGCTGTGCTGCATTTATGGCACTGGACGTCTACTTTCCTCAGATAAGCAGTGTCAAAGACCGCAAGAAGGCTGTGTTAGCTGATATTGGAGTTTCAGCCTTCTGGTCTTTCGTGTGGTTTGTGGGATTCTGTTTCCTGGCCAATCAGTGGCAGGTGGCTAAACCAGAGGATAACCCCCTCAAAGAGGGTGGAGACGCAGCCAGAGCAGCCATCACCTTCGCCTTCTTCTCCATATTTACATGGGACTATACTGATCCCAGCCAGGATCCCGCAGGAGCGCCCACAGCAGGCACGGAGTACACTGGATACAACGCCGACATGGAGGCTAATTATGACGGCTCTGGTGGATACCAGAACCAAGACTACTAAGGTCAAGTATAAGGATGTACACAACAGCCTTAACAAGCTAGGCTGATGGGGTTGGTTACATGGGGAAACAAAATATGGGGTGAAAAGGACAAACATGAACTTTGGGCACTTGGGGTAGAATATGGGGGACCAAAGCTGACTGACAGGAATTCAGGGGTTTTTTGGTGCTATAATAACCCCTTGTGGAATTTATAGTGGGGTTGGGTGTTTCAAACACTGAAAGGGTGTTTCATTGAGTCTATAAAATATATTTTGCAGCTTGGGGACTGTGGCACTAGATCTCTCAATTTTATTTTATTATTTTTTTTTTTTTATGGTGCCACCAGGAGTTTTTGCCTTCAGTTTTGGGGTTATGGGTTTGGGGACGATTGGTCAGCAGTTGTGTCCATTCTGAGCAAACCCTACAAAGTGTCCATTATATAGGCTAATACAGAACTTCACTTTGGTTTATTATACTTAATTCAGATTTGTGAAAACTAAACTGATGGACGTTTGTCTCTAAGAAACTAGCTTAGTATTGGTCATACGTGTGACAAAATCTTACCAAACTAAATGTTTCTAAAGACTGCAGTGTCTTTTTGTGTAGGTGATTCAATAGAACATTACATTAACCCTTACCCTGTCTCTAGAACACAATCTCTATTGATAGCTTTCTGCTGCCATTTTCTCAATGTCCAAGGGTCTTAAATGATCTCTTTTAACAATATCAGGTCTAGAA

Function

symbol description
syngr1a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Is expressed in nervous system; neural crest; optic vesicle; and pigment cell. Orthologous to human SYNGR1 (synaptogyrin 1).
syngr1 Predicted to be involved in regulated exocytosis; regulation of neuronal synaptic plasticity; and synaptic vesicle membrane organization. Predicted to act upstream of or within cellular response to leukemia inhibitory factor and protein targeting. Predicted to be located in synaptic vesicle. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Predicted to be integral component of synaptic vesicle membrane.

GO:

id name namespace
GO:0030672 synaptic vesicle membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_03214677_03229150.mRNA True 1912 mRNA 0.44 5 3214215 3229868

Neighbor

gene id symbol gene type direction distance location
CI01000034_03195900_03212503 FAM171A2 coding upstream 1530 3195308 ~ 3212685 (+)
CI01000034_03151977_03170691 NA coding upstream 43477 3151382 ~ 3170738 (+)
CI01000034_03145811_03149071 NA coding upstream 65144 3145625 ~ 3149071 (+)
CI01000034_02957414_02963572 NA coding upstream 250184 2957095 ~ 2964031 (+)
CI01000034_02770255_02774341 NA coding upstream 439648 2770099 ~ 2774567 (+)
CI01000034_03235135_03236084 TCAP coding downstream 5058 3234926 ~ 3236590 (+)
CI01000034_03273191_03285382 NA coding downstream 42552 3272420 ~ 3294805 (+)
CI01000034_03312399_03327633 TAOK2A, TAOK2, TAOK2B, TAOK2.L coding downstream 82531 3312399 ~ 3328593 (+)
CI01000034_03331693_03336338 CDIPT coding downstream 101825 3331693 ~ 3337116 (+)
CI01000034_03343690_03351003 NA coding downstream 113822 3343690 ~ 3351118 (+)
G170263 NA non-coding upstream 75159 3138803 ~ 3139056 (+)
G170260 NA non-coding upstream 82795 3131137 ~ 3131420 (+)
G170165 NA non-coding upstream 152187 3061481 ~ 3062028 (+)
G170073 NA non-coding upstream 328614 2881891 ~ 2885601 (+)
G170066 NA non-coding upstream 369128 2844834 ~ 2845087 (+)
G170244 NA non-coding downstream 15878 3245746 ~ 3249130 (+)
G170274 NA non-coding downstream 27922 3257790 ~ 3258069 (+)
G170276 NA non-coding downstream 29914 3259782 ~ 3260036 (+)
G170280 NA non-coding downstream 51538 3281406 ~ 3283172 (+)
G169806 NA other upstream 876525 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 1483038 1729413 ~ 1731179 (+)
G169340 NA other upstream 1903337 1250219 ~ 1310878 (+)
G169394 NA other upstream 2020655 1150297 ~ 1193560 (+)
G169357 NA other upstream 2095196 1053543 ~ 1119019 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other downstream 204268 3432846 ~ 3438839 (+)
CI01000034_04125435_04125780 RPRML other downstream 895232 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 964770 4192311 ~ 4200636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026297 syngr1a coding NC_007114.7 CM002887.2 21251627 ~ 21280373 (-)