CI01000034_03343690_03351003


Basic Information

Item Value
gene id CI01000034_03343690_03351003
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3343690 ~ 3351118 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_03343690_03351003.mRNA
TGAAGCCAGTCACGCGACCAGCCCGGCCTGCACACATCTGCTCCATATGTAATAAGCAGTTTAAGAACAGCTACAACCTGCGGCGTCACCAGTCTGTCCACACTGGAGTGAAGATGAAGGACAGAGCCGCTAGAGAGAAAATAGACGGAGGGAAGGCTGCAGCACGATTGGAGAGGCAGACCATCCCCCTTTCTCTCCTCCAGCTGTCTATACCTGCCTCCATACCCACAGCAGTCGACCCGATGGCCCATCCTTCCCCAATCGGCAATCAGCAGCGGTTTAAGAGAAAGGATCGAATGAGTTATCACGTTCGGTCACACCAGGGAGGAGTGGAGAAACCGTACGTGTGTCCGCACTGCGCCAAGGGCTTCTCACGGCCTGACCATCTTAACAGTCATGTGCGACAGACCTGCGAATCCGCGTTCGCTACTAAAGACCGGTTACGAGCTCATATGATCAGACATGAGGACAAGGTTCCCTGCCACATCTGTGGCAAACTTCTCTCCCCTGCTTACATCACAGATCACATGAGGGTCCACAATCAATCACAGCATCACGTCTGCCACCTCTGCAACCGCAGTTTCACCACACTGACGTACCTGCGCGTCCACGCTCAGAAGCACCATGGGCAAGAGTGGAAGGAGAGTGGCGTCGGCCGTGGCTCAGGCCCAGGCGGGGTGCTCTTATGCCAGCTGTGTGGGGTACACTGTAAGACACCCACACAGCTGCAGGGTCACATGGCCACGCACGCCAACCAAACGGACCCCAGCGTTCCTTGCCCCATCAGCAGCAGCAGCAGTTCAGTGCCAACAGTGGGCACCGCCACTCCTGTCTCCAGCCCTCCAGTCACAGTTGGGCTGCTGGTGACTGACTGCTCCAGCATTGCTCCTCAGAGCCACAGCTAGCCAAAAGCACACCAGGAGGAGGGAGGGTGGGGTAGATGAAGCGGGGGTAATGGGTGGGAGGGGAGAAAATTGTGCAAGAGGATGGGCCTAATCTGGACAGGTGAGGATTGATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_03343690_03351003.mRNA True 1020 mRNA 0.57 5 3343690 3351118

Neighbor

gene id symbol gene type direction distance location
CI01000034_03331693_03336338 CDIPT coding upstream 6574 3331693 ~ 3337116 (+)
CI01000034_03312399_03327633 TAOK2A, TAOK2, TAOK2B, TAOK2.L coding upstream 15097 3312399 ~ 3328593 (+)
CI01000034_03273191_03285382 NA coding upstream 58056 3272420 ~ 3294805 (+)
CI01000034_03235135_03236084 TCAP coding upstream 107100 3234926 ~ 3236590 (+)
CI01000034_03214677_03229150 SYNGR1, SYNGR1A coding upstream 113822 3214215 ~ 3229868 (+)
CI01000034_03358125_03363411 NA coding downstream 4591 3355709 ~ 3364036 (+)
CI01000034_03373181_03385238 FAM57B, FAM57BA, FAM57BB coding downstream 21409 3372527 ~ 3386058 (+)
CI01000034_03396650_03402951 NA coding downstream 45532 3396650 ~ 3403134 (+)
CI01000034_03407574_03419313 FAM117A, FAM117AA coding downstream 54834 3405952 ~ 3419391 (+)
CI01000034_03422028_03431218 SLC35B1, S35B1 coding downstream 70171 3421289 ~ 3431596 (+)
G170280 NA non-coding upstream 60518 3281406 ~ 3283172 (+)
G170276 NA non-coding upstream 83654 3259782 ~ 3260036 (+)
G170274 NA non-coding upstream 85621 3257790 ~ 3258069 (+)
G170244 NA non-coding upstream 94560 3245746 ~ 3249130 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L non-coding downstream 83018 3432846 ~ 3438839 (+)
G170305 NA non-coding downstream 225309 3576427 ~ 3576638 (+)
G170328 NA non-coding downstream 246560 3597678 ~ 3597877 (+)
G170330 NA non-coding downstream 247584 3598702 ~ 3598939 (+)
G170332 NA non-coding downstream 248886 3600004 ~ 3600216 (+)
G169806 NA other upstream 1006000 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 1612513 1729413 ~ 1731179 (+)
G169340 NA other upstream 2032812 1250219 ~ 1310878 (+)
G169394 NA other upstream 2150130 1150297 ~ 1193560 (+)
G169357 NA other upstream 2224671 1053543 ~ 1119019 (+)
CI01000034_04125435_04125780 RPRML other downstream 773982 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 843520 4192311 ~ 4200636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012282 NA coding CM030138.1 CM030138.1 14523821 ~ 14527422 (-)