CI01000034_03358125_03363411


Basic Information

Item Value
gene id CI01000034_03358125_03363411
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3355709 ~ 3364036 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_03358125_03363411.mRNA
GTATATAAACATAATATATAGGTCACGGAGCAGATTAATTAGCCAGCTAGCCAGAGGTAACAGCTGGTTAGGTCGTATTAGCTACATTATATTAGAGTTAACTGGCTTGAAAATGACATCAAATTAAACAAAACATGTAGAAGATTGAGATATGTGTTGGCAGACTATTGTGGTGTGTGGAATGGCTTGTAGCAGCTTAAATATAACCAGTTGTGTCATTGCAGCGTAGCTTGTTAGCTTGGGTAAATAACGTTAGAGGAAAGAGCAGCTTGCGAACACAAAACTGATGTTAACTTTCCAGACGTGTTGCAAGCCCTTTTTAATTTATTATCATTATTTTTACATGCTGTTTAAACCGATGTTATCGATAAAGGTGCTGTCAGGCCACCGACCGAGCACATGATTAAAGTACATCAACCTTTGGCATGCATTTGGTCTAGTAATGTTTCTGATTGATCTGCGGTGTTGCAATGCGGATGCACTGCAACTGAACACTGACTCTAAGACGAGTTGTTTGTTTCGCCTAATATTTGCCAGTTTGTTTAGATTTAGTACTTTATTTATTTATTGTTGTCCATTGTAACCTAATTCATTTTGGGCTGGTTATTTGTTGAGGAAGTCTTTACCTTAATGTACCATAACATACTACCGTATTGCCGTAAAGACTATTCAAACAATGATGTTGAAAGGAATAGTCAAACATGTGTATAATATATATACATTTAAGCTTAATATATCTAAATTTTTAGTCATTATTTATTTACACACTTCATGTCATCACAAACTTGCATGTGATATGTTAAGCCCCCAAAATGACAAAAACACCATAAAAGTGGTCCATACAACTCATATGGTATATTCCAAAGTCTTCTGAAGGAATATGATAACTTGGTGTGAGGAACAAGCTAAATTATAAGGCTTAAAGGGTTAGTTCACCCAAAAATGAAAATGATGTCATTTATTACTCACCCTCATGCTGTTCCACACCCATAACACCTTCGTTCGTCTTCAGAACACAAATTAAGATATTTTTGATTCAATCTGATGACCTCTACTGCCAGCAAGATAATTAACACTTTCAAATGCCCAGAAAGCTACTAAAGACATTATTAAAACAGCTCATGTGACTACAGTGGTTCTATCTTAATATTATAAAGTGACGAGAATACTTTTTGTGCACCAATAAAAAAAATAACGACTTTTCAACAATATCTAGTGATGGGCGAGTTTAAAGCACTGCTTCATGAAGCTTCGAAGCTTAAGGAATCTTTTGTTTCGAATCAGTGATTTGGATCGCGTATCAAACTGCTGAAATCACGTGACTTTGGCGCTCCGAACAACTGATTAGAAAAAAAATTTGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTTTGAAACAGGCCATCACTAGATATTGTTGAAAAGACGTTATTTTGTGTTTTTTGGCGCACAAAAAGTATTCTCGTCGCTTTATAATATTAAAGTAGAACCACTGTAGTCACATAAACTGTTTTAAATATGTTTTGAGTACCTTTCTGGATCTTGAGAGGTTCGGTGGCATTGCTGGCAATAGAGGCCTCACTGAGCCATCGGATTTCGTCAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTAGGGTGTGAAATGACATGAGGGTGAGTAATAAATGACATAATTTTCATTTTTGGGTGAACTAACCCTTTAAATTCACTGGGGAGAAACTATCCCCTGCATTTTGATTGTCATTTTCCATCCCATATAATGAGACTTACATTTTGTTTTTCAATTTTGACAAACATGAGAACCGATATAGCAATGTGTCTAATGGTAACATATTTGAAATTAATAAAATTTCACAAGAAGCCTGTTTTGTTCCATGAATGAAGAGCCTGTTTTGTTCCATTTGTCTTCCATTAAAAAAATAACAGGTACGAGTATGAGTAAATGCTGACAGAATGTTGTGTTGTTGTTGTTGTTGGTAATATGTCACTTAGAAATTTAGAATAATTTAGAAATTTGTGATTTTATTTACCTACTGAAGGAGTGTAGTTAAATAGTAAAATCAATTTAAAGGGATTGTTCACCTAAAAATGAAAATGGTCATTTATTCACCCTCATGTATTACTGACTTTCCTCTGTGGAGAGCAAAAGAAGACATTTTGAAGAATGTTTGTAACCAAACAGTTTTACTTCCCATTGATTTCTGTTGTATGGACAAAAAATACAAAGTCAGTAAGAAATTGCTTGGTTATCAACATTCTTCAAAATATCTTATTTTGTGCTCAGCATGAAGAAAGAAATGCATACAGGTTTGGAACAACGTGAGGGTAAATATATAATAGCAGAATTTTCATTTTTGTGGTTGACTATCCCTTTAATGATCATTTCTCACCTGTGTTTGTTTTAGGATGGCGTTCCATGGATCCACTCGGCCGACAGTGTGTGGTAACTTGTTCCCTGGATCAGATTTAGGCCACAAGTATTTTTGTGTCAACACCACGACCGGCACTACCTCAACGGGCCTCAGTGCAACACCAAATCCCACTGGACCCAACGCACCAGCTGGGACTCCCAGGCACCCGGCATCTCTCGGGGGCAGCGCAGGCGGAGGGGCGGCCATCCCGCAACCTCACAGTAACCCAGCGAGTGAGGTTCCAAGTCCAGCTGAAATGGAACCAGATCGACCTATCGGTTATGGTGCATTTGGGGTGGTCTGGTCTGTGACGGACCCTCGGGATGGGCGAAAGGTGGCTCTGAAGAAAATGCCGAATGTCTTCCAGAACCTGGTCTCCTGCAAACGTGTGTTCAGGGAACTCCGGATGCTGTGTTTCTTTAAACATGACAACCCTCTCACCACCGATCACATCAAGGTGTTCCTCTACCAGATACTCAGGGGGCTGAAGTACCTGCACTCTGCAGGCATTCTGCACAGAGACATCAAACCAGGGAACCTGCTGGTCAACAGCAACTGTCTGCTTAAGATTTGTGACTTCGGCCTGGCACGAGTGGAGGAGCCAGATCCTTCTCGTCACATGACCCAAGAGGTGGTGACGCAGTATTACCGCGCTCCGGAGGTTCTGATGGGATGCCAGCATTACACTTCAGCTATAGATGTCTGGTCTCCATCATTGTCTGTTCTGTACATGTTGTCAGATGGGGCGACACATGAAGCTGTTCATCTTTTGTGCCGCATGCTAGTTTTTGATCCAGCCAAGCGCATCTCGGGCAGTGATGCTTTGTCTCATCCGTATTTGGATGAGGGTCGTCTGCGGTACCACACCTGCATGTGTAAGTGCTGTTACTCAGTGCCCAGCGGGAGGGTATACACCCGAGACTTCGAGCCGCCTGCGGATCGACCTTTCAGCCACAACTATGAGCAGAGCATGCACTCTGTCTGGCAGGGCAAAGAGCTCATCCATCGTTTTATAACGGAGCACCAGCAAGGCAAACGAGTGCCTTTGTGCATCAATCCCCAGAGTGCAGCCTTTAAAACCTTCATTAGGTCAGTACAAGGATATGCGTTTTCTGACAAACCTTTTTCAAATACATTCACTCAAAAATGAACAATGACACTGAGATGTAATATTTACTCATTCATATAGTTCTGCTTAGCTATAAGATTTACAATTGTTGTTGTATTTTTAAATGCCTGGTGTTAATGCTGATTATCTATAAAAAGTAGGGTGGCCTCTCTAAAAAAAAAAAATTGACATGGTTATTAATTTATCTTTTATGTATAATCCTATATTATAATAATAATAATAATAGTATATTGTTATCATTGCCTGTTACCACAGCAAAAATCTAGCTTTTAATAATTAAACATTTATTAAAGGGATAGTTCACCCCAAAATGAAAATTCTGTCATCATTTACTCACCCTTAGGTTGTTCCAAACCTGTATAAATTTCTTTGTTCTGTTGAACACAAAGGAAGATATTTTGAAGAATGTGAGAAACTGAACATTTCTGGGGCACCATTGACTTCCATTGTATTTATTTTTCCTACTATGGAAGTCAGTGGTGCCCCAAAGCATCCTGGTTACAAACTTTCTTCAAAATATCTTCCTTTGTGTACAGCAGAACAAAGAAATTTATACAGATTTGGAACAACTTGGGAGTGAGTAAATGGTGACAGTATTTTCATTTTTGGGTGAACTATCTCTTTAAAGACAAGTGCACAGTCAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_03358125_03363411.mRNA True 4196 mRNA 0.39 8 3355709 3364036

Neighbor

gene id symbol gene type direction distance location
CI01000034_03343690_03351003 NA coding upstream 4591 3343690 ~ 3351118 (+)
CI01000034_03331693_03336338 CDIPT coding upstream 18593 3331693 ~ 3337116 (+)
CI01000034_03312399_03327633 TAOK2A, TAOK2, TAOK2B, TAOK2.L coding upstream 27116 3312399 ~ 3328593 (+)
CI01000034_03273191_03285382 NA coding upstream 70075 3272420 ~ 3294805 (+)
CI01000034_03235135_03236084 TCAP coding upstream 119119 3234926 ~ 3236590 (+)
CI01000034_03373181_03385238 FAM57B, FAM57BA, FAM57BB coding downstream 8491 3372527 ~ 3386058 (+)
CI01000034_03396650_03402951 NA coding downstream 32614 3396650 ~ 3403134 (+)
CI01000034_03407574_03419313 FAM117A, FAM117AA coding downstream 41916 3405952 ~ 3419391 (+)
CI01000034_03422028_03431218 SLC35B1, S35B1 coding downstream 57253 3421289 ~ 3431596 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L coding downstream 68810 3432846 ~ 3438839 (+)
G170280 NA non-coding upstream 72537 3281406 ~ 3283172 (+)
G170276 NA non-coding upstream 95673 3259782 ~ 3260036 (+)
G170274 NA non-coding upstream 97640 3257790 ~ 3258069 (+)
G170244 NA non-coding upstream 106579 3245746 ~ 3249130 (+)
G170305 NA non-coding downstream 212391 3576427 ~ 3576638 (+)
G170328 NA non-coding downstream 233642 3597678 ~ 3597877 (+)
G170330 NA non-coding downstream 234666 3598702 ~ 3598939 (+)
G170332 NA non-coding downstream 235968 3600004 ~ 3600216 (+)
G169806 NA other upstream 1018019 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 1624532 1729413 ~ 1731179 (+)
G169340 NA other upstream 2044831 1250219 ~ 1310878 (+)
G169394 NA other upstream 2162149 1150297 ~ 1193560 (+)
G169357 NA other upstream 2236690 1053543 ~ 1119019 (+)
CI01000034_04125435_04125780 RPRML other downstream 761064 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 830602 4192311 ~ 4200636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026291 nlk1 coding NC_007114.7 CM002887.2 21066315 ~ 21094525 (-)