CI01000034_03887718_03890074


Basic Information

Item Value
gene id CI01000034_03887718_03890074
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3887165 ~ 3890409 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_03887718_03890074.mRNA
CTATATATTCTCCCGAAGGCAGGAGTGCTCCACACTGGACTGTGACATTCCAATGAAATGCGCACGTCACCGCTCTGATGTTTAACGAACCAGCGCGCTCATTGGAAAATCATGTTTTCCCCAAATCAGAACGTCTTGATTGGACATCGCAGGTGACGCCCACAAACAGACAAGGTGGAGTTTAATTATTTAACGTGACAAAAAGATGTTGCTGTCAGACTGAAAATACTGAAAAGATGTTAAAAGTACACAACAGTTCACTCTTCACATGTACTTTGGGAGTTTATTTGACTTAAACGCAGGAATACTGCTTATCTTTTTTTCTTCCTTTTTTCTTATTTTTTTTTTTTAAACCACACTGGAACATAAATCAAATACACTTCTTTTATTAAAACTTTTACATGATCATCATGACTAAACAAATGTGTTCAAAACAAGCCCGAAAAGCTACACGCGCGTGCAGGTTTGATGGCGCCTCGGTAGCTCCAAGCTCGTGACAGCAGCTCCGAGTTTATAATCCAAATGGAAGCGAAACCCGGGCGACCCATCCGTGATGAGAGCGGCAAGCAGGGGAGAGATTGAAAATGCGGATGTCGCTTTGGAAAGAGAAATGAGCGGATCGAGAGAGCTGCGCGCTGACTGGAAGGAGAGCGAGAGAGATGGAGGCGGGGGGAAGTCTCTCAGCTCTGCGGGGACTGGAGCGCCCGTGCCCTGGACCGGCGGCGCAGTGCTGGCTAACATTCAACCCTCCCCTTGTTCCACCACCAGTTCCACACACAAGCAGCGACAGCCTTTGAACAGCTTGCTGCCATACGGCTGCACACATCGTGCTTTCACCCCGCATTCCTCGTCACTCGAAAGTCGGGGTAAACAACCAGATTTCTTTACGCAGTCACTCATGATGATCCCTGGCTGTGTTTCCCCCTCTCGACGGAGACCGAAAACAGATCCCGATCCGTGGTCAGCTGGTCCGTCTACAGGCAGCTGCCTGCGTATCGCCCAAAACGCTCCTTCCTCCTCCTGTAGTACCTCCCAGTATCCACTCGTCCGCCGAAAAAATACTCCATTTTCGAGCTACTACACGAAACGCTCGCCTCGAAAAGCGCGGAGAGTACAGAAGAAGCCGTTTCAAGTCTTAGTTCAGTAGACAAAATGGAAGATTAGACGGATTGGCTGCTCTTGCTGGTGTCGACTGCAGAGTTATTTGAGATTTGAAACCGTCACAAGCAATGGGCTCTGTCTCACGATGGAGCGTAAACGCTTAGGGGCGGTGTAATGAACATCAACCATTATGTGTCGGGCTGGATTTTAATTCCACACTTTAGACAACAGTTCCTGTTTTCGAAATATTCATGAGTAGCTTCTAGGTGTTTAATAGGCGAATCTTACGGCAGGAAAAAAAAAAACAATCCCCATGTTAATATGGTGCATTCTTATTGTTTTGAATAATTTGATGCAAAATTAGTAGTTGAAAAAATGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_03887718_03890074.mRNA True 1482 mRNA 0.47 3 3887165 3890409

Neighbor

gene id symbol gene type direction distance location
CI01000034_03869116_03883535 SLC4A1A coding upstream 3475 3869116 ~ 3883690 (+)
CI01000034_03855726_03858565 NA coding upstream 27854 3855551 ~ 3859311 (+)
CI01000034_03670122_03684523 NA coding upstream 201949 3669943 ~ 3685216 (+)
CI01000034_03656686_03659087 NA coding upstream 227993 3656686 ~ 3659172 (+)
CI01000034_03556390_03566045 NA coding upstream 320640 3554625 ~ 3566525 (+)
CI01000034_03890532_03897571 UBTF coding downstream 29 3890438 ~ 3899195 (+)
CI01000034_03900854_03907256 ATXN7L3 coding downstream 10445 3900854 ~ 3908450 (+)
CI01000034_03923671_03931871 NA coding downstream 32103 3922512 ~ 3931903 (+)
CI01000034_03946027_03949208 NA coding downstream 55182 3945591 ~ 3949656 (+)
CI01000034_03983251_03998632 RND2 coding downstream 92842 3983251 ~ 3998885 (+)
G170211 NA non-coding upstream 21732 3860791 ~ 3865433 (+)
G170437 NA non-coding upstream 30990 3855932 ~ 3856175 (+)
G170435 NA non-coding upstream 36275 3850567 ~ 3850890 (+)
G170432 NA non-coding upstream 39347 3847568 ~ 3847818 (+)
G170443 NA non-coding downstream 49931 3940340 ~ 3940807 (+)
G170444 NA non-coding downstream 50766 3941175 ~ 3941400 (+)
G170459 NA non-coding downstream 85358 3975767 ~ 3975989 (+)
G170226 NA non-coding downstream 122090 4012499 ~ 4016560 (+)
G170252 NA non-coding downstream 126410 4016819 ~ 4017036 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other upstream 435316 3432846 ~ 3438839 (+)
G169806 NA other upstream 1549475 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 2155988 1729413 ~ 1731179 (+)
G169340 NA other upstream 2576287 1250219 ~ 1310878 (+)
G169394 NA other upstream 2693605 1150297 ~ 1193560 (+)
CI01000034_04125435_04125780 RPRML other downstream 234691 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 304229 4192311 ~ 4200636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G296711 NA non-coding NW_019172828.1 APWO02000046.1 880196 ~ 895088 (-)