CI01000034_04101415_04114654 (ITGB3A)


Basic Information

Item Value
gene id CI01000034_04101415_04114654
gene name ITGB3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4100622 ~ 4114654 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_04101415_04114654.mRNA
ATGGGACTAAATTTGATGGAAGTTTGGGTACCAGTTTTACTTCTAGTTTCCTCAGCTGCAAGCTCTAACATTTGCACTTCCAGAGGAGTGAGTACCTGTAAAGAATGTCTGTCGATCCATCCAACCTGTGCTTGGTGCTCTCAAGAGATCTTTGGAAAGGGAGGGTCAGGAATATCCCGGTGTGATCTCAAAGACCATCTCATTCAGTCTGGTTGTGGCGTGAAGTTTATTGAGTTTCCAGTTAGCAGTATGAGGACCCTAGAGGATGTACCTCTGAGTGACAAGGCAGGGGGTTCAGCCAGCGATATCACTCAGATCCAACCCCAAAAAATCCACCTAACCCTCAGGCCAGATGATTCAAAGCAATTCACAGTCAAAGTGAAGCAAGTATCTGATTACCCAGTTGACCTGTACTACCTGATGGACATGACCAATACCATGAAGGACGACCTGCAGAAGCTTTATGCACTTGGCAATGATCTGGCCACTGCCTTACGTCGCGTCACCAGTAATCTGCGCATGGGATTCGGAGCTTTTGTAGACAAACCGCTCTCACCTTATATGTACATTAACTCTGAAGAAATCATCAGGAATCCTTGCTATAAGTCTAACGAAGTCTGCCCACCGCAATTCGGCTACCGTAATGTACTGTCTCTAACGGAGCAAGTAGAGCGGTTCACAGAAGAAGTGAAGAAACAGAAAGTGTCCAGAAACAGAGATTCTCCTGAGGGAGGATTTGATGCTATCATGCAAGCAGTAGTATGCAAGGAGAAGATTGGATGGAGGCCTGATGCATCTCATTTGCTGATCTTCACAACTGATGACAGAAGTCATTTGGCTTTGGATGCAAAGCTGGCCGGAATCGTTCAGCCCCATGATGGAGAGTGCTACATCAATAACAACAATGAATATGACAAGTCCACTATACTGGACTATCCTTCACTTGGCATGATCACGGACAAGATATCTGAGAATAACATCAACCTCATCTTTGCTGTAACCAGCAATACAATTCCACTATATCGAAATTACAGCGAGCTGATTCCTGGCTCTGCGGTTGGAATGCTCTCCGAAGACTCTGGAAATGTTGTGCAACTCATTCTGGATGCATATGCGAAGATCAGGTCTAAGGTTGAGCTGGAGCTGTTGGGTGTGCCAGATGAGTTATCTCTATTCGTCAACGCAACATGCCTGGATGGACAGGTCATTGCAGGTGTCCGGTCCTGCGGCGGACTCAAAATCGGCGATACGGTTTCATTCAACATTGAGGCAAAACTTCACGGCTGTCCCAAAGAGAAGAGTCAGACCTTCATTCTGAAGCCAACGGGCTTTAAAGACAGCCTTCAGGTCACTGTGGACTTTGCTTGTGAATGTGGCTGTCAGCAGTCCTCCGAGCCCGCTAGCCCATCCTGTCACCACGGCAATGGAACGCTGGAGTGCGGCGTGTGCCTGTGCGATCCGGGCCGACTGGGCTCTCGATGTGAGTGCTCCGAGGGCGAATATAATCCCAGCCAACAAGACAGCTGTAGCCCTAACCCAGAGACGCCGGTCTGTAGCGGACGCGGAGACTGTGTGTGCGGCCAATGTGCCTGTCGCTCGAGTGATTTTGGGAAGGTTTGGGGGCCGTACTGTGAATGTGACGACTTCAGCTGCCTCCGTTCCAAAGGACAGCTGTGTTCAGGTAATGGTGAGTGCAACTGTGGGTCTTGTCACTGTAGTTCTGGATGGTCCGGCGAGAGCTGTGACTGTTCGACCCGCACAGAGACCTGTATGGGGGGTGGAGAAATGCTCTGTAGTGGGCGTGGCCACTGCATGTGTGGCGTCTGTGAGTGCACTCAGCCAGGAGCTTATGGATCGACCTGTGAGAAATGTCCCACCTGCCCAGATGCCTGCACCATCAAAAAGGAGTGTGTGGAGTGTAAACACTATAAGAGAGGGGATCTGTTTGAGAAGAACTGCAATCACGTCTGCAGAGATGAGATTGTGCTGATGGATGAGCTGGTCTTTCATGAGAAGAACGCAGTGAACTGCAGCTACAAGGATGAGGATGACTGTGTTCAGAACTTCCAGTATTATGAAGATGCCAGTGGAAAATCCTTTCTCTATCTTGTTAAAGAACCAGACTGTCCGAAAGGTCCTGATGTCTTGGTGGTTGTCCTATCGGTCACTGGTGCGATCCTGCTGCTGGGTTTGGCTGCGATTTTTGTGTGGAAGCTCCTGATCACCATTCACGACCGTCATGAATTTGCCAAGTTTGAGGAAGAGAAAGCCAAGGCTAAGTGGGAAGCGGCTAATAATCCGCTCTACAAAGGAGCCACCAGCACCTTCCAAAATGTAGCATATCGTGGCAGTTAAGAAACCACAACTGCTTCTGTCAAGAACAACTACTGATCATCTCTACAACACATCTCAGCCAGTCACCGCTGGTTTCACCTAGGCTTGTGGCTATTTAGAACTGTGGTGATACTGCAGAATGTACCAAAACATGTTTATTATTATTATTATTAGATTATTAAAATGGTACCATTCAGAAGTTTGTGGTCATTATGATATTTTTTTTAATTCAGCATGGATGCATTTTAGCAACGTTCTATTTATCAAGAATAGAATAAAAAAATTTATCATGGTTTTAAAAAAAAAAAAAAAAAATTCAAATTTGATAATAAGAAGACCTTTCTTGAGCACCAAATCATCATATTAGAATGATTTCTAATGAATTATGTGGCACTGAAAACTGAAGTAATGATCCTGAAACAGTCATTTTAAATGATAATAATATTTTACTATATATATATTTATTTTCCTGTGTTTTTGATCAAACAATTGCAGCCTTGGTGAGCAGAAGAGACTAATCTTACAGACCCAAAACTTTTGAACAGTAGTGTTTATCTTGGCCAATGAAACAATGTTTTGACTGACTTTTTCCTCCATTGTAATGTAAATATTGTGATAAGAATATGTTTTAATCTTATATGAATGGTTCTGTGTGTATAAAACAGGATTAAGCACTCTGGAGTGACAATTATAGTTACAGTGTGAACATGTTCAGTGTAACCTCAATTGCAATTTTTAATGATTCAACGGTCCAAAGTCGTTTTTTTCACTTATACCACAGTTACCTCAATGGTGTTATTTTGTTAATAATAAA

Function

symbol description
itgb3a Predicted to enable fibronectin binding activity and integrin binding activity. Predicted to contribute to fibrinogen binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within platelet aggregation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Is expressed in brain and pectoral fin. Human ortholog(s) of this gene implicated in several diseases, including acute myeloid leukemia; autoimmune thrombocytopenic purpura; blood platelet disease (multiple); end stage renal disease; and non-arteritic anterior ischemic optic neuropathy. Orthologous to human ITGB3 (integrin subunit beta 3).

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_04101415_04114654.mRNA True 3148 mRNA 0.44 15 4100622 4114654

Neighbor

gene id symbol gene type direction distance location
CI01000034_04090497_04095923 NA coding downstream 4699 4090232 ~ 4095923 (-)
CI01000034_04087755_04088054 NA coding downstream 11858 4087563 ~ 4088764 (-)
CI01000034_04065210_04081772 TLK2 coding downstream 18850 4064519 ~ 4081772 (-)
CI01000034_04019323_04045212 MRC2 coding downstream 55410 4019240 ~ 4045212 (-)
CI01000034_03956763_03960891 NA coding downstream 139731 3956763 ~ 3960891 (-)
CI01000034_04154954_04164874 NA coding upstream 39997 4154651 ~ 4164874 (-)
CI01000034_04165535_04172272 KCTD13 coding upstream 50719 4165373 ~ 4172272 (-)
CI01000034_04174469_04189564 SEZ6L2 coding upstream 59762 4174416 ~ 4189564 (-)
CI01000034_04216451_04218876 NA coding upstream 101580 4216212 ~ 4221881 (-)
CI01000034_04239062_04242494 NA coding upstream 124117 4238771 ~ 4242640 (-)
G172297 NA non-coding downstream 36461 4063892 ~ 4064161 (-)
G172366 NA non-coding downstream 53482 4046675 ~ 4047140 (-)
G172298 NA non-coding downstream 83928 4012500 ~ 4016694 (-)
G172316 NA non-coding downstream 163156 3934545 ~ 3937466 (-)
G172303 NA non-coding downstream 168005 3931628 ~ 3932617 (-)
G172378 NA non-coding upstream 1829 4116483 ~ 4116934 (-)
G172379 NA non-coding upstream 2325 4116979 ~ 4117214 (-)
G172384 NA non-coding upstream 10465 4125119 ~ 4126846 (-)
G172398 NA non-coding upstream 87159 4201813 ~ 4202052 (-)
G172402 NA non-coding upstream 97800 4212454 ~ 4212802 (-)
G172151 NA other downstream 702809 3391144 ~ 3451802 (-)
G172016 NA other downstream 864007 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1589101 2510061 ~ 2511521 (-)
G171835 NA other downstream 1654329 2441821 ~ 2446293 (-)
G171755 NA other downstream 2234249 1864118 ~ 1866373 (-)
G172593 NA other upstream 878306 4992960 ~ 4994943 (-)
G172800 NA other upstream 1674378 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1682916 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025250 itgb3a coding NC_007114.7 CM002887.2 19621034 ~ 19649535 (+)