CI01000034_04165535_04172272 (KCTD13)


Basic Information

Item Value
gene id CI01000034_04165535_04172272
gene name KCTD13
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4165373 ~ 4172272 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_04165535_04172272.mRNA
GCCGTTACGGGGGGCGGAACTAACTCGCTTGACAGACATTCATTTGGACCAATCAGTCAACGAAAGACACTCCTCGCGCGAGGTCGAGCAGCCATTGTCAACCCACAACAAGCCAGAAAGAGGAAGACAGTCGTGCTGCGAGACGACAGAGGAAATTATGATTTGTTGAAAAATAATGGCAGGTTTACTGTTATAGATGTAACAGTCCGTAGCGATTACGTTATATTTTGTGCACCTTATCGCGGGGACCCAGCTCGCCATGTTGGGGAAGGAAAGGCCGACAGGAGCCTGGCGGGCAGTAAGTATGTGAAGCTCAATGTGGGGGGAACTCTCCACTACACCACCGTCCAGACGCTCAGCAAGGAGGACAGTCTGCTCAGGAGTATTTGTGATGGGAGCACGGAGGTCACCATAGACTCTGAGGGCTGGGTGGTGCTAGACAGATGTGGGAGACACTTTTCCCTGGTGCTGAACTTCCTGCGGGACGGGACAGTTCCTTTGCCGGAGAGCACGCGGGAGCTGGAGGAAGTGTTGAAAGAGGCGCAGTACTACAGGCTCCAGAGTCTTGTTCAGCATTGCCTCACCACATTACAGGTTAGAGGATCCACTGGACTTGTGTTTCTGTCCCTTCAGTATTCTTCTAAAGAAGCATATGTCTGCATAAAAATTAAATGCTTCTTTGAACCAAACTTGCTAATGGCTTTTTTGATGTTGATGCAGAAACGCAGAGATGTCTGCAGGGGTTGTCACATTCCTATGATCACTTCAGCCAAAGAGGAACAGAGAATGATAGCAACATGTAGGAAGCCAGTGGTGAAACTGCAGAATAACAGAGGGAACAATAAATACTCCTATACCAGCAACTCTGATGATAACCTTCTGAAGAACATCGAGCTGTTCGATAAGCTGGGGCTGCGCTTTAATGGCAGAGTGTTGTTCATTAAAGACGTGTTGGGAGATGAGATATGCTGCTGGTCTTTTTACGGCGAGGGACGCAAGATTGCTGAAGTCTGCTGCACCTCTATTGTTTATGCCACTGAGAAGAAACAGACCAAAGTTGAGTTCCCAGAAGCTCGTATCTTTGAGGAGACACTCAACATTTTGATCTATGAAAATGGGCGAGGCTCGGGTTCGGGAGGCATGGCCCTGCTGGAGTCAGGGGGCGTCTCGTCACCAGGTGTGGGCCAGTCGGAGGAGGAAGGGGCGGGTGTAGGGGGCGGGGATAGGCGGACAAAGAAGACTCCTGGCATGATGACAGTAGTTACCACTAAGTTACAAACCACTTCATAAAACAATGTTTTATTGACCAATGTAAGCCATAAATGTATGCACTCACTGTCCCTAGAGCAAAAACACCTCCTTAATTCTGCCAATTAAACTAGAATGCCGTCCAAATGTTGTCTTGGAATATTAATCAAATGGAGTTAATATACCATTAACATTTTCAATAAA
>TU195735
CCACAACAAGCCAGAAAGAGGAAGACAGTCGTGCTGCGAGACGACAGAGGAAATTATGATTTGTTGAAAAATAATGGCAGGTTTACTGTTATAGATGTAACAGTCCGTAGCGATTACGTTATATTTTGTGCACCTTATCGCGGGGACCCAGCTCGGCAGTAAATAAGCAGTATTTGATTTCTACTCCCCTGATGTCTGCTGAGGCATCTGGTTCATCTGGTGGGAATGTGGTGACTATGTCCGGTTCTGCCTCATCGTCCTCCAGCCATGTTGGGGAAGGAAAGGCCGACAGGAGCCTGGCGGGCAGTAAGTATGTGAAGCTCAATGTGGGGGGAACTCTCCACTACACCACCGTCCAGACGCTCAGCAAGGAGGACAGTCTGCTCAGGAGTATTTGTGATGGGAGCACGGAGGTCACCATAGACTCTGAGGGCTGGGTGGTGCTAGACAGATGTGGGAGACACTTTTCCCTGGTGCTGAACTTCCTGCGGGACGGGACAGTTCCTTTGCCGGAGAGCACGCGGGAGCTGGAGGAAGTGTTGAAAGAGGCGCAGTACTACAGGCTCCAGAGTCTTGTTCAGCATTGCCTCACCACATTACAGAAACGCAGAGATGTCTGCAGGGGTTGTCACATTCCTATGATCACTTCAGCCAAAGAGGAACAGAGAATGATAGCAACATGTAGGAAGCCAGTGGTGAAACTGCAGAATAACAGAGGGAACAATAAATACTCCTATACCAGCAACTCTGATGATAACCTTCTGAAGAACATCGAGCTGTTCGATAAGCTGGGGCTGCGCTTTAATGGCAGAGTGTTGTTCATTAAAGACGTGTTGGGAGATGAGATATGCTGCTGGTCTTTTTACGGCGAGGGACGCAAGATTGCTGAAGTCTGCTGCACCTCTATTGTTTATGCCACTGAGAAGAAACAGACCAAAGTTGAGTTCCCAGAAGCTCGTATCTTTGAGGAGACACTCAACATTTTGATCTATGAAAATGGGCGAGGCTCGGGTTCGGGAGGCATGGCCCTGCTGGAGTCAGGGGGCGTCTCGTCACCAGGTGTGGGCCAGT

Function

symbol description
kctd13 Predicted to contribute to ubiquitin-protein transferase activity. Involved in negative regulation of Rho protein signal transduction. Acts upstream of or within central nervous system development; neural precursor cell proliferation; and positive regulation of apoptotic process. Predicted to be located in nucleus. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in brain; forebrain; hindbrain; midbrain; and retina. Orthologous to human KCTD13 (potassium channel tetramerization domain containing 13).

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG:

id description
K15074 BACURD; BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_04165535_04172272.mRNA False 1452 mRNA 0.48 7 4165373 4172272
TU195735 True 1071 TUCP 0.50 7 4166499 4172170

Neighbor

gene id symbol gene type direction distance location
CI01000034_04154954_04164874 NA coding downstream 499 4154651 ~ 4164874 (-)
CI01000034_04101415_04114654 ITGB3A coding downstream 50719 4100622 ~ 4114654 (-)
CI01000034_04090497_04095923 NA coding downstream 69450 4090232 ~ 4095923 (-)
CI01000034_04087755_04088054 NA coding downstream 76609 4087563 ~ 4088764 (-)
CI01000034_04065210_04081772 TLK2 coding downstream 83601 4064519 ~ 4081772 (-)
CI01000034_04174469_04189564 SEZ6L2 coding upstream 2144 4174416 ~ 4189564 (-)
CI01000034_04216451_04218876 NA coding upstream 43962 4216212 ~ 4221881 (-)
CI01000034_04239062_04242494 NA coding upstream 66499 4238771 ~ 4242640 (-)
CI01000034_04318823_04319740 FOXD3, FOXD1 coding upstream 146272 4318544 ~ 4320127 (-)
CI01000034_04350907_04363668 NA coding upstream 178334 4350606 ~ 4363683 (-)
G172384 NA non-coding downstream 38527 4125119 ~ 4126846 (-)
G172379 NA non-coding downstream 48159 4116979 ~ 4117214 (-)
G172378 NA non-coding downstream 48439 4116483 ~ 4116934 (-)
G172297 NA non-coding downstream 101212 4063892 ~ 4064161 (-)
G172366 NA non-coding downstream 118233 4046675 ~ 4047140 (-)
G172398 NA non-coding upstream 29541 4201813 ~ 4202052 (-)
G172402 NA non-coding upstream 40182 4212454 ~ 4212802 (-)
G172411 NA non-coding upstream 86283 4258555 ~ 4258786 (-)
G172412 NA non-coding upstream 86994 4259266 ~ 4259613 (-)
G172413 NA non-coding upstream 88698 4260970 ~ 4261263 (-)
G172151 NA other downstream 767560 3391144 ~ 3451802 (-)
G172016 NA other downstream 928758 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1653852 2510061 ~ 2511521 (-)
G171835 NA other downstream 1719080 2441821 ~ 2446293 (-)
G171755 NA other downstream 2299000 1864118 ~ 1866373 (-)
G172593 NA other upstream 820688 4992960 ~ 4994943 (-)
G172800 NA other upstream 1616760 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1625298 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026212 kctd13 coding NC_007114.7 CM002887.2 15213980 ~ 15227666 (-)